Gene Lcho_0688 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0688 
Symbol 
ID6164096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp739125 
End bp739835 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content71% 
IMG OID641663439 
Productpirin domain-containing protein 
Protein accessionYP_001789728 
Protein GI171057379 
COG category[R] General function prediction only 
COG ID[COG1741] Pirin-related protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.530435 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCACGC TACACAAGTC GGCTCACCGC GGCCAGGCCG ACCACGGCTG GCTCAAGAGC 
TTCCACAGTT TTTCGTTCGC CGACTACCAC GACCCGGCGC GCATGGGCTG GGGCAACCTG 
CGGGTCATCA ACGAAGACCG CATCGCCCCC GGCACCGGTT TCGGCACCCA CGGCCACCGC 
GACATGGAGA TCGTCAGCTA CGTGCTCGAA GGCGAACTCG CGCACCGCGA CAGCATCGGC 
AATGGCGAGG CGATCCGCCC GGGCGAGGTG CAGCGCATGA CCGCCGGCAC CGGCGTGCGC 
CACAGCGAGT TCAACCACGC ACCCGACGCC ACCACGCATT TCCTGCAGAT CTGGCTGCTG 
CCCAGCCGCG CCGGCCTGGC GCCGGGCTAC GAGCAGCGTC AGTTTGCGGC CGAAGACAAA 
CGCGGCCGGC TGCGCCTGGT GGCCGCGCCC GAGGGCTCGG CGGACGTCGG CGATGCCGTC 
ACGCTGCATG CCGACGCGCG CCTGTGGGTC GGCCTGTTCG ACGGCGACGA GCGGGCCGAA 
CTGGCGCTGC CGCCCGCTCG CAAGGCCTAC GTCTTCCTGG CGCGCGGCAC CTTGAACGTC 
AACGGCCATG TGCTGCAGGC CGGCGATGCG CTGGCGCTGG ACCGCGAGAC GGCCCTGACG 
CTCGGCCAGG GCGACGCCGC CGAGGTGCTG GTGTTCGATC TGGCGCCCTG A
 
Protein sequence
MITLHKSAHR GQADHGWLKS FHSFSFADYH DPARMGWGNL RVINEDRIAP GTGFGTHGHR 
DMEIVSYVLE GELAHRDSIG NGEAIRPGEV QRMTAGTGVR HSEFNHAPDA TTHFLQIWLL 
PSRAGLAPGY EQRQFAAEDK RGRLRLVAAP EGSADVGDAV TLHADARLWV GLFDGDERAE 
LALPPARKAY VFLARGTLNV NGHVLQAGDA LALDRETALT LGQGDAAEVL VFDLAP