Gene Lcho_0620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0620 
Symbol 
ID6160184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp668280 
End bp669170 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content71% 
IMG OID641663370 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_001789660 
Protein GI171057311 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.326399 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATTC TCCTGCTCGG CAAGAACGGC CAGCTCGGCT GGGAATTGCA ACGTGCACTG 
GCGCCGCTGG GTGAGCTGAT CGCGCTCGAT CGCCATGCCA CCGACTTCGC TGCCGACCTG 
GCCCAGCCCG ACTCGCTTGC AGCCACCGTG CGCGCGCTGC AGCCGCAGGT CATCGTCAAC 
GCCGCTGCCT ACACCGCGGT CGACAAGGCC GAGAGCGAGC CCGAACTCGC GCGCACCGTC 
AACGCCACCA GCCCGGGCGT GCTGGCCCAG GCCGCGGCCG AAGCCGGCGC TTGGTTGCTG 
CACTACAGCA CCGACTACGT CTTCGACGGC AGCGGCACCG CTGCCCGCAG CGAAGACGCC 
GCCACCGCGC CGCTCAACGT CTACGGCCAG ACCAAGCTCG AAGGCGAAGC GGCGATCCGC 
GCCAGCGGCT GCCGCCACCT GATCCTGCGC ACCAGCTGGG TCTATGCGGC ACGTGGCGGC 
AACTTCGCCA AGACCATGCT GCGGCTGGCC GGCGAGCGCG AGCGCCTGAC CGTCATCGAC 
GACCAGATCG GCGCCCCCAC CGGCGCCGAC CTGCTGGCCG ACCTCAGCGC CCACATGCTG 
CGCCAGGCGC TGCAGCAGCC CGAATGCGCC GGCACCTATC ACGCGGTGGC CGGCGGCGAA 
ACCAGCTGGC ACGCCTACGC CCGCCACGTG ATCGAGTGGG CGCGTGCGCA CGGCCACGAG 
CTGAAAGCGA CCGACATCGC CGCCGTGCCC AGCAGCGCCT TCGCCACGGC AGCGCAGCGC 
CCGCTCAACT CACGGCTGTC GACCGCCAGG CTGCAGCAGG TCTTCGGCCT GCACCTGCCG 
CATTGGCAGA CCGGTGTCGA CCGCATGCTG GCCGAAGTGC TCGGCCGCTG A
 
Protein sequence
MKILLLGKNG QLGWELQRAL APLGELIALD RHATDFAADL AQPDSLAATV RALQPQVIVN 
AAAYTAVDKA ESEPELARTV NATSPGVLAQ AAAEAGAWLL HYSTDYVFDG SGTAARSEDA 
ATAPLNVYGQ TKLEGEAAIR ASGCRHLILR TSWVYAARGG NFAKTMLRLA GERERLTVID 
DQIGAPTGAD LLADLSAHML RQALQQPECA GTYHAVAGGE TSWHAYARHV IEWARAHGHE 
LKATDIAAVP SSAFATAAQR PLNSRLSTAR LQQVFGLHLP HWQTGVDRML AEVLGR