Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0494 |
Symbol | |
ID | 6160360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 535400 |
End bp | 536293 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641663243 |
Product | succinyl-CoA synthetase subunit alpha |
Protein accession | YP_001789534 |
Protein GI | 171057185 |
COG category | [C] Energy production and conversion |
COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00647129 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGATTC TCATCAACAA AGACACCCGC GTCATCACGC AGGGCATCAC CGGCAAGACC GGCCAGTTCC ACACGCTGGG CTGCCAGGCC TATGCCAACG GCAAGAACGC GTTCGTCGCG GGCGTGAACC CGAAGAAGGC GGGCGAGAAG TTCGCCGACA TCCCCATCTA CGCCAGCGTC AAGGAAGCCG CGCAGCAGCA AGGTGCGACC GTCAGCGTGA TCTACGTGCC GCCCGCCGGC GCGGCAGCGG CGATCTGGGA AGCGGTCGAA GCCGACCTGG ACCTGGCGAT CTGCATCACC GAAGGCATCC CGGTTCGGGA CATGCTCGAA GTGCGCAACA AGATGAAGGC CAAGGAAGCC GCCGGCGGCA AGAAGACGCT GCTGCTGGGC CCCAACTGCC CGGGCCTGAT CACGCCCGAG GAGATCAAGA TCGGCATCAT GCCCGGCCAC ATCCACCGCA AGGGCCGCAT CGGCGTGGTG AGCCGTTCGG GCACGCTGAC GTATGAAGCG GTCGCCCAGC TGACCGAGAT CGGCCTGGGC CAATCGAGCG CGGTGGGCAT CGGCGGCGAC CCGATCAACG GCTTGAAGCA CATCGACGTG ATGCGCGCCT TCAACGACGA TCCGGACACC GATGCGGTGA TCATGATCGG CGAGATCGGC GGCCCCGATG AAGCCGAAGC GGCGATGTGG TGCAAGGCGA ACATGAAGAA GCCGATCGTC GGTTTCATCG CCGGCGTGAC GGCGCCCGCG GGCAAGCGCA TGGGCCATGC CGGTGCGCTG ATCAGCGGTG GCGCGGACAC GGCGGACGCC AAGCTCGCGA TCATGGAGGA GTGCGGCTTC ACGATCACGC GCAACCCCAG CGAGATGGCT CGCCTGCTGA AGGCGCTGCT GTAA
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Protein sequence | MSILINKDTR VITQGITGKT GQFHTLGCQA YANGKNAFVA GVNPKKAGEK FADIPIYASV KEAAQQQGAT VSVIYVPPAG AAAAIWEAVE ADLDLAICIT EGIPVRDMLE VRNKMKAKEA AGGKKTLLLG PNCPGLITPE EIKIGIMPGH IHRKGRIGVV SRSGTLTYEA VAQLTEIGLG QSSAVGIGGD PINGLKHIDV MRAFNDDPDT DAVIMIGEIG GPDEAEAAMW CKANMKKPIV GFIAGVTAPA GKRMGHAGAL ISGGADTADA KLAIMEECGF TITRNPSEMA RLLKALL
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