Gene Lcho_0480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0480 
Symbol 
ID6162098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp518405 
End bp518977 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content73% 
IMG OID641663229 
Productrare lipoprotein B 
Protein accessionYP_001789520 
Protein GI171057171 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2980] Rare lipoprotein B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCACGG CCCCGTTCGA TCGCGCGCCG CGCCGGCGCC TGCTGGTGCG GGCCGGTGCG 
GCCGGTGCGG CCGGTGCGCT GCTCGCGGCG CTGGCGGGCT GCGGCTTCCA GCTGCGCCGC 
CCGCCCGAGC TGCAGCTCAA GCGCATCCAT CTGAAGGGTT TCGATCGCTA TTCGTCGATG 
GCCGACGAGT TGCGCCGCCA GCTGCGCCTG AGCCCCGGTG CGCAGCTGGT CGAAGCTGCC 
GGCGAGGCCG ACGCGGTGCT CGAAGCGATC GTCGACACGT CCGGTCGGGT GGTGGCCGCC 
TCCACCGCCG CCGGTCAGGT GCGCGAGCTG ACCTTGCGCG CCGCCTTGCG TTTCCGTGTG 
CTGGACGCTG CCGGCCGCGA ACTGCTCGGC CCGACCGAAC TCGCCCAGAG CCGCGACATG 
AGCTACGCCG AAAACGACGC GCTGGCCAAG GAAAACGAGG CCCAGCTGCT GTTGCGCAAC 
ATGCATGGCG ACATCGCCAA CCAGGTGCTG CGGCGCCTGG CCGCGCTGGC ACCCGCTGCC 
GCGCCGGCCT CGGCCGCGTC TGCCGCTCGC TGA
 
Protein sequence
MSTAPFDRAP RRRLLVRAGA AGAAGALLAA LAGCGFQLRR PPELQLKRIH LKGFDRYSSM 
ADELRRQLRL SPGAQLVEAA GEADAVLEAI VDTSGRVVAA STAAGQVREL TLRAALRFRV 
LDAAGRELLG PTELAQSRDM SYAENDALAK ENEAQLLLRN MHGDIANQVL RRLAALAPAA 
APASAASAAR