| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0403 |
|---|
| Symbol | |
|---|
| ID | 6161692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 441836 |
|---|
| End bp | 442753 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641663152 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001789443 |
|---|
| Protein GI | 171057094 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.177749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCACA TCCCGCCCCT CGCCAACCTG CAGGCCTTCG AGGCCGTGGC GCGCCGCCGC
AGCTTCGCGC TGGCCGCCGG CGAGCTCAAC CTGACCGCCT CGGCGGTGAG CCACCAGATC
GCCCGGCTGG AGTCGTTTCT CGGCGTGCGG CTGTTCGACC GCTCGGCGCA GGGCGTCAAG
CTCAGCGCCG CCGGCGAGGG CTACCTGCGC CGCGTCGCCG GCGCGCTGGG TGCCATCGGC
GCGGCCACCG ACGACGTGCG CCAGGGCGTG CGCAACAGCC TGTACGTGCA CGCCAGCCCG
AGCTTCGCCA GCCTGTGGCT GATGCCGCGG CTGGCGCACT TCGCCCAGGC CCATCCGGGC
ATCTCGCTGT TCCTGTCGGC CTCGCCGACG CACAGCGATT TCGCGCTCGG CCAAGCCGAT
CTCGACGTGC GCTACGGCAC GCCGCAGTGG CCCGACCTGG TGGTGCAGCC GATCTTCGAG
GAGCCCATCC TGCCGCTCGC CAGCCCCGCC TTCATCGCCC GCCACCGGCT GCGCGAGCCG
GCCGAGCTGC TGCTCACGCC GCTGATCCAG AGCACCGTCA GCGTGGTGCA GTGGGCCGAC
TGGCTCACCA CGCAGGGCGT GACGCAGGGC CCGGAGCGCT TCGCGCTGCG CTTCGACCGC
GCCCAGCTCG CGCTCGACGC CGCCGTGCAG GGCCTGGGCG TGGCGCTGGA GAGCGCCACC
ATCGCCCAAG CGCACATCGC CGAGGGCCGG CTGGCGCCGC TGTTCGACAC CGCCCGGGCG
GTGCGGGTGC AGGCGCACTT CCTGGTCTAC CCGGCACGCC ACGCCAAGCG GCCCGAGGTG
GAGTCCTTCA ACGCGTGGCT GAAGGATCAG GCGAGCGCCG CACCCGGCGC GGCGGCGCAG
GTACCGCCGT CAGCGTGA
|
|---|
| Protein sequence | MAHIPPLANL QAFEAVARRR SFALAAGELN LTASAVSHQI ARLESFLGVR LFDRSAQGVK
LSAAGEGYLR RVAGALGAIG AATDDVRQGV RNSLYVHASP SFASLWLMPR LAHFAQAHPG
ISLFLSASPT HSDFALGQAD LDVRYGTPQW PDLVVQPIFE EPILPLASPA FIARHRLREP
AELLLTPLIQ STVSVVQWAD WLTTQGVTQG PERFALRFDR AQLALDAAVQ GLGVALESAT
IAQAHIAEGR LAPLFDTARA VRVQAHFLVY PARHAKRPEV ESFNAWLKDQ ASAAPGAAAQ
VPPSA
|
|---|
| |