| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0326 |
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| Symbol | |
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| ID | 6161450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 352711 |
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| End bp | 353715 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641663075 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001789366 |
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| Protein GI | 171057017 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCA AGACCCGCAC CCTTCTCCTC GCCGCCGCCC TGATGACGGC CCTGGCCGGC
CCGGCCGCGG CGCAAAAAGT GCTGAAGGTC GGCATCGGCC TGTCCGACGA TCACCCGCAG
GGTCTGGCGG TCAAGAAGTT CGGCGAGCTG CTGGCGCAGA AGTCCGGCGG CAAGCTCAAC
GCCAAGCTCT ACGCCAGCGG CTCGCTGGGC AACGACGTGA CGATGACCTC GGCGCTGCGC
GGCGGCACCC TGGAGATGAC GGTGCCCGAC AGCTCGACGC TGGTCAGCCT GGCCAAGGAT
TTCGGGGTCA TCAACCTGCC GCTGACGATC AACACCGAGC AGGAGGCCGA TGCGCTGCTC
GACGGCCCGT TCGGCCAGAA GCTGCTCGAC AAGCTGCCCG AGAAAGGCCT GGTCGGCCTG
GCGTTCTGGG AAAACGGCTT CCGCCACCTG ACCAACAGCC GCCGCCCGAT CACCAAGGCC
GACGACATCG CCGGCCTGAA GGTGCGCGTG ATCCAGAACC CGCTGTTCAT CGAGAGCTTT
GCCGCACTCG GCGCCAACGC CACGCCGATG CCGTTCACCG AGCTGTATTC GGCGATGGAG
CAGAAGGCGG TCGACGGCCA GGAGAACCCC GGCGCCACCA TCCTGGCGAG CAAGTTCTTC
GAGGTGCAGA AGCACATGGT GACCTCGCGC CACATCTACA GCGCCTGGGT GCTGCTGCTG
TCGAAGAAGA CCTGGGACGG CTTCAGTGCC GACGAGAAGA AGGCGGTGCA GGACGCCGCG
CGCGAGGCCA CGCTGTTCGA GCGCAAGACC ATCCGTGATT TCAGCGACAA GGCGCTGGCC
GAGCTGAAGA AGGAAGGCCT GCAGATCACC GAGCTGCCCG CCGCCGAGCA GGCCAGGATG
CGCACCAAGC TGGCGCCGGT GGTGGCCAAG TTCAGCAAGG AGTTCGGCGA GGCGACGTCC
AAGGAGATGT TCGCCGAGCT GGAGCGCATC CGCGCCAGGA AATAA
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| Protein sequence | MAFKTRTLLL AAALMTALAG PAAAQKVLKV GIGLSDDHPQ GLAVKKFGEL LAQKSGGKLN
AKLYASGSLG NDVTMTSALR GGTLEMTVPD SSTLVSLAKD FGVINLPLTI NTEQEADALL
DGPFGQKLLD KLPEKGLVGL AFWENGFRHL TNSRRPITKA DDIAGLKVRV IQNPLFIESF
AALGANATPM PFTELYSAME QKAVDGQENP GATILASKFF EVQKHMVTSR HIYSAWVLLL
SKKTWDGFSA DEKKAVQDAA REATLFERKT IRDFSDKALA ELKKEGLQIT ELPAAEQARM
RTKLAPVVAK FSKEFGEATS KEMFAELERI RARK
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