Gene Lcho_0220 details

Gene Information

• Locus tag: Lcho_0220
• ID: 6163484
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 231449
• End bp: 233494
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641662964
• Product: transketolase
• Protein accession: YP_001789260
• Protein GI: 171056911
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00103383
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTTGCCA TCACTGAAAC CTCCCCCACC CAGCTGGCCA ACGCGATCCG CGCGCTTGCC 
ATGGACGCCG TGCAACAAGC CAACTCCGGT CACCCTGGTG CCCCGATGGG CATGGCCGAC 
ATCGCGGTGG CACTCTGGAA GCGCCACCTC AAGCACAACC CGAGCGATCC GCAGTGGACC 
GACCGCGACC GCTTCGTGCT GTCCAACGGC CACGGCTCGA TGCTGCTGTA CGCGCTGCTG 
CACCTGACCG GCTACGCGCT GCCGATCGAG CAGCTGCGCA ACTTCCGCCA GATGCACAGC 
CAGACCCCGG GCCACCCGGA AGTCGGCGTG ACCCCGGGTG TCGAGACCAC CACCGGCCCG 
CTCGGCCAGG GCATCAGCAA CGCGGTCGGC ATGGCGCTGG CCGAGAAGCT GCTGGCCGCC 
GAGTTCAACC GCCCCGGCCA CGCCATCGTC GACCACCACA CCTACACCTT CCTCGGCGAC 
GGCTGCCTGA TGGAAGGCAT CAGCCACGAG GCCTGCGCGC TGGCCGGTGC CTGGAAGCTC 
AACAAGCTGA TCGCGCTGTA CGACGATAAC GGCATCTCGA TCGACGGCAA GGTCGCGCCC 
TGGTTCGTCG ACGACACCGC GCTGCGGTTT GCGGCCTACG GCTGGAACGT GGTCGGCCCG 
GTCGACGGCC ATGACATCGA CGCCGTCGAT GCCGCCATCA CCGAGGCCAG GAAGAGCACC 
GACAAGCCGA CCCTGGTGAT CTGCAAGACC GCCATCGGCA AGGGTTCGCC CAACCGCGCC 
GGCACCGCCA AGGCGCACGG CGAGCCGCTG GGCGCCGAAG AGATCGCGCT GACCCGCGAG 
TCGATCGGCT GGGACGCCGA GCCGTTCGTG ATCCCCGAGG ACATCTGCGC CGCCTGGGAC 
TGCCGCGTGG CCGGCGCTGC CGCGCAGGCC GCGTGGGAAG ACCGCTACTC GGCCTACGTG 
CTCGAGTTCC CGGAGCTGGC GGTGGCCTTC GAGCGCCGCA TGGCCGGCGA CCTGCCCGAC 
AACTTCGCCG AGATCGCCGT CACCGCGGTG GCCGACGCGC ATGAAAAGGG CGAGACCGTC 
GCCAGCCGCA AGGCCAGCCA GATCGCGCTG GAGCACTTCA CCGCCGCGCT GCCCGAGCTG 
CTCGGCGGCA GCGCCGACCT GACCGGCTCC AACCTGACCA ACACCAAGAG CACGCCGGCC 
CTGCGCATCG CGGCCGACGG CGCGGTGGTC AAGACCGAAG CGGGCCAGAT CGGCCGCCAC 
ATCAACTACG GCGTGCGCGA GTTCGGCATG GCCGCGATCA TGAACGGCGT GGCGCTGCAC 
GGCGGTTTCA TCCCCTACGG CGGCACCTTC CTGACCTTCA GCGACTACAG CCGCAACGCC 
ATCCGCATGG CCGCGCTGAT GAAGACGCGC GTGATCCACG TCTTCACGCA CGACTCGATC 
GGCCTCGGTG AAGACGGCCC GACCCACCAG TCGGTCGAAC ACGCCGCCAG CCTGCGCCTG 
ATCCCCAACC TGGACGTCTG GCGCCCGGCC GACACCGCCG AGACCGCGGT CGCCTGGACC 
ATGGCGCTGG CCAACCGCCA CCGCCCGAGC GCGCTGCTGC TGAGCCGCCA GAACCTGGCC 
TACGCGCCCA AGTCCGACGC CGACGTCATC ACCAAGGGCG CCTACATCCT GTCCGAGCCG 
CGCGACATCG GCCTCAACAA GAAGGCCAAG GCCGTCATCA TCGCCACCGG CTCCGAGGTG 
CAGCTGGCGC TGCAGGCGCA GAAGGCGCTG GCCGAAGCCA AGATCGCGGT GCGCGTGGTG 
TCGATGCCCA GCACCACGGT GTTCGACCGC CAGGACGTCA AGTACAAGAA GGACGTGCTG 
CCCAAGGACC TGCCGCGCAT CGCGGTCGAA GCCGGCGTCA CCGACTTCTG GTGGAAGTAC 
CGCTGCGACG CCGTGATCGG CCTCGACACC TTCGGCGAAT CGGCGCCGGC GCCGGTGCTG 
TTCAAGCACT TCGGCTTTAC CGTGGAAAAC ATTGTTGCCA CGGTGCGCAA AGTCCTTTCT 
AAGTAA 

 

Protein sequence

MVAITETSPT QLANAIRALA MDAVQQANSG HPGAPMGMAD IAVALWKRHL KHNPSDPQWT 
DRDRFVLSNG HGSMLLYALL HLTGYALPIE QLRNFRQMHS QTPGHPEVGV TPGVETTTGP 
LGQGISNAVG MALAEKLLAA EFNRPGHAIV DHHTYTFLGD GCLMEGISHE ACALAGAWKL 
NKLIALYDDN GISIDGKVAP WFVDDTALRF AAYGWNVVGP VDGHDIDAVD AAITEARKST 
DKPTLVICKT AIGKGSPNRA GTAKAHGEPL GAEEIALTRE SIGWDAEPFV IPEDICAAWD 
CRVAGAAAQA AWEDRYSAYV LEFPELAVAF ERRMAGDLPD NFAEIAVTAV ADAHEKGETV 
ASRKASQIAL EHFTAALPEL LGGSADLTGS NLTNTKSTPA LRIAADGAVV KTEAGQIGRH 
INYGVREFGM AAIMNGVALH GGFIPYGGTF LTFSDYSRNA IRMAALMKTR VIHVFTHDSI 
GLGEDGPTHQ SVEHAASLRL IPNLDVWRPA DTAETAVAWT MALANRHRPS ALLLSRQNLA 
YAPKSDADVI TKGAYILSEP RDIGLNKKAK AVIIATGSEV QLALQAQKAL AEAKIAVRVV 
SMPSTTVFDR QDVKYKKDVL PKDLPRIAVE AGVTDFWWKY RCDAVIGLDT FGESAPAPVL 
FKHFGFTVEN IVATVRKVLS K