| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0177 |
|---|
| Symbol | |
|---|
| ID | 6160758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 185343 |
|---|
| End bp | 185708 |
|---|
| Gene Length | 366 bp |
|---|
| Protein Length | 121 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641662921 |
|---|
| Product | nitrite reductase (NAD(P)H), small subunit |
|---|
| Protein accession | YP_001789217 |
|---|
| Protein GI | 171056868 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
|---|
| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCACG ACACGCAAGA CCTCGACAAG AGCACCTGGA GCCCGGTGTG CTCGCTCGAC
GACATCGTTC CCAACACCGG CGTCTGCGCC CTGGTGGGCG AGCGGCAGGT GGCGGTGTTC
CACCTCGACC GCAGCGACAG CGACGACGAG CGCCTGTTCG CGATCGACAA CTTCGACCCC
GGCTCGCAGG CCGGCGTGCT CTCGCGTGGG CTGGTGGGCT GCCTGGGCGG GCGCATCGTC
GTCGCCTCGC CGATCTACAA GCACCACTTC GATCTGCGTA GCGGCGAATG CCTGGAAACC
CCCGAGCACT CGGTCAACGC CTATCCGGTG CGCGTGCAGG ACCGGCAGAT CTGGGTCGCG
GTCTGA
|
|---|
| Protein sequence | MNHDTQDLDK STWSPVCSLD DIVPNTGVCA LVGERQVAVF HLDRSDSDDE RLFAIDNFDP
GSQAGVLSRG LVGCLGGRIV VASPIYKHHF DLRSGECLET PEHSVNAYPV RVQDRQIWVA
V
|
|---|
| |