| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0125 |
|---|
| Symbol | |
|---|
| ID | 6162706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 127798 |
|---|
| End bp | 128880 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641662869 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001789165 |
|---|
| Protein GI | 171056816 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3214] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0129878 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGC GCCTGGAACA GCTGCGGCGC CACGCGCTGG CCCGCAGCCT GTTCGCACCC
ACTACCTTGC CGGCCGCACT GCAGCGCCTG GGCTTTGTCC AGGCCGACCC GCTGCGGGCG
CCGGCCAAGG CCCAGGACCT GACGCTGCGC CACCGCGTGC GCGACTACCG CGCCGGCGAG
CTGGAGCAGC GCTACCCGAG GCTGGGGGTC GAGGAAGACT TCTTCGTCAA CTACGGCTTC
GTGCCGCGCC GCGTGCAGGC CTTGCTGCAG CCGCGCCAGG CGCGCCGGGC GTGGGACGAC
GACCGCTGGC AGCAGGCCCG CGCGGTGCAG GACTTCGTGC GCCAGCGCGG CGTGGCCCAC
CCGCGCGAGG TCGACGCGCA GTTCGACCAC GGCACGGTGG GCAACTGGTT CGGCGGCCGC
TCGCGCGCCA GCACCGAACT GCTGGACGGC ATGCACTACC GCGGGCTGTT GCGCGTGGCA
CGGCGCGAAG GCGGCACCCG GCTGTACGCG GTGCGCGAGG CCACGCCGGA AGCCGCCGAC
CCCTTGCTGG CGCTGGACAC CCTGACCGAT CTGCTGCTGC AGACCTATGC GCCGCTGCCT
GCGCCCAGCC TGTCGCAGCT GCTGGGCCTG CTGCTGGGCG GCGGGGTGCC GCAATGGCGC
CACCTGCGCG CCGCCACGCT GCAACGCGCC CAGGCGCGCT GGCCCGGCGC CGAGGTGGAC
GGCCTGCGCT GGCACTGGCC CGTGGGCGAG GACCCGGCCC GCAGCCGCCG CCACTCGCCC
GAGCGGGTCT GTCTGCTGGC GCCGTTCGAC CCGGTGGTCT GGGACCGCCG CCGCTTCGAG
ATCTTCTGGG GCTGGGCCTA TCGCTTCGAG GCCTACGTAC CCGCCGCCCG GCGCCAGCGC
GGCCACTACG CGCTGCCGCT GCTGTGGCGC GACCAGGTCA TCGGCTGGGC CAACGTGAAG
GTGCAGGCCG GCCGGCTGAT GCCCGACATG GGCTATGTCG ACAAGCGGCC CGCGGAAGTG
GCGTTCGGAC AGGCGCTCGA CGAGGAGTTG GACCGCCTGC ATCACTTCCT GGGCCTGGGC
TGA
|
|---|
| Protein sequence | MTLRLEQLRR HALARSLFAP TTLPAALQRL GFVQADPLRA PAKAQDLTLR HRVRDYRAGE
LEQRYPRLGV EEDFFVNYGF VPRRVQALLQ PRQARRAWDD DRWQQARAVQ DFVRQRGVAH
PREVDAQFDH GTVGNWFGGR SRASTELLDG MHYRGLLRVA RREGGTRLYA VREATPEAAD
PLLALDTLTD LLLQTYAPLP APSLSQLLGL LLGGGVPQWR HLRAATLQRA QARWPGAEVD
GLRWHWPVGE DPARSRRHSP ERVCLLAPFD PVVWDRRRFE IFWGWAYRFE AYVPAARRQR
GHYALPLLWR DQVIGWANVK VQAGRLMPDM GYVDKRPAEV AFGQALDEEL DRLHHFLGLG
|
|---|
| |