Gene Lcho_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0076 
Symbol 
ID6160300 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp78637 
End bp79338 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content73% 
IMG OID641662820 
Productmalonate decarboxylase, gamma subunit 
Protein accessionYP_001789116 
Protein GI171056767 
COG category 
COG ID 
TIGRFAM ID[TIGR03134] malonate decarboxylase, gamma subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.658515 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTGGC ACACGCTCCT GCAGCGGCTG TTCGGCGACG CGCACGCGGT GCAGGCGGAC 
GGCGATTTCC TGCACGGCAC GGCGCAGCTC GACGGCGCCA CGCTCGCGAT CGTCGGCACC 
ACCGGCCATG CACCGATCGG CGTGGCGCTG GCATTGCGCC AGGCCCGTGC GGTGCTCGAC 
ACACTGGCCT TGCACCCGGG CCGCGCCATC GTGCTGCTGA TCGACACCCA GGGCCAGCAG 
CTGCGACGCC GCGACGAGCT GCTCGGCATC AACCGCGCGA TGGCGCACCT GGGCTGCTGC 
ATCGACCAGG CGCGGCGCCA GGGCCACCGC GTCATCGGGC TGGTCTACGA CCAGGCGCTG 
TCGGGCGGTT TCATCACCTC GGGACTGATC GCCGACGCCT GCTACGCGCT GCCCGAGGCC 
GAAATCCGCG TCATGCGCAT CCCGGCGATG GCGCGGGTGA CCAAGATCTC CGAGGAGCGG 
CTGACCGCGC TGTCGAAGGA CAACCCGGTG TTCGCGCCCG GCGTGCAGAA CTACGTCGCG 
ATGGGCGGCA TCCGCGCGCT GTGGTCGGGC GACCTGGCCG CCGCCTTGCG TGATGCGCTG 
GCCCACGCGC CGACCGACGA CGTGCGCGCC GCCGACGGTG CCGAGCGCGG CGGGCGCCAG 
CTCGCGGCGG CGGTGGTACA GCGGGTGCTT GACGCGGCTT GA
 
Protein sequence
MDWHTLLQRL FGDAHAVQAD GDFLHGTAQL DGATLAIVGT TGHAPIGVAL ALRQARAVLD 
TLALHPGRAI VLLIDTQGQQ LRRRDELLGI NRAMAHLGCC IDQARRQGHR VIGLVYDQAL 
SGGFITSGLI ADACYALPEA EIRVMRIPAM ARVTKISEER LTALSKDNPV FAPGVQNYVA 
MGGIRALWSG DLAAALRDAL AHAPTDDVRA ADGAERGGRQ LAAAVVQRVL DAA