Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_1524 |
Symbol | |
ID | 4439280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 1516490 |
End bp | 1517296 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 639673351 |
Product | XRE family transcriptional regulator |
Protein accession | YP_815316 |
Protein GI | 116630144 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000100554 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 0.616883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATTG GCGAAGCATT AAAACAATAT CGTACTAGCG CAGGACTGAC TCAAAAAGAA TTCACTCAAA ATATCCTTTC TCCAGCGCAT TACTCGAAAA TAGAACGTAA TCTACATGAA ATTTCAGCAA ATGACCTGCT AAAACTGTTG AGTCAAAATA AAATACGTTA TTCAGATTTT TTCTCATCCC TCGATCAAAA CAACGTAAAC GACCAAGATG AAAAACTTAG TGAGCAATTA TTATCTGCTT ACTATGATCG AAATCTCGAT AAAGCAAAGG AAATCTATAC TCAAATTAAT ACATCTAATG ATGATTTACT TAAATTACAA GCTCAACTTA TTCTCAATAC TCTACAATCA GGTCGTCATA AATTTCCTAA AAACAAAGAT AAAATTATAC AAAAAGTCTT TTCAGGTACT CATTGGCTCA ATGATTCTCA CAAAATTCTG ATATTAGCTA CCTTTATTGA AGTTCTTGAT CCCTTTGACT TACCTTTCTT TTTAAATCAA ATTTATCAGA AATATCAAAA CAATCTTGGT AAACAAACTC TAAAAATTCA AGAAAGCGTT GCATCTTTCT GTATCAACTA TTTATATTCA GCATCCCAAA ACAGAAATAT TGGTTCAACT AATAAAGCTA TTCAACTATT AACTCAATTA ACAGAATATC CCGAATTAGG TATTGAGAAA ATTATAGGTT ATTACTATCA TTGTTACTTT ACAAATCAAA AAGAACAATT AAAGACCATT ATTACTATTT TAAAGAAAAG TAACTTAAGT AAAACAATAA ATATCTTGCC ACAATAA
|
Protein sequence | MNIGEALKQY RTSAGLTQKE FTQNILSPAH YSKIERNLHE ISANDLLKLL SQNKIRYSDF FSSLDQNNVN DQDEKLSEQL LSAYYDRNLD KAKEIYTQIN TSNDDLLKLQ AQLILNTLQS GRHKFPKNKD KIIQKVFSGT HWLNDSHKIL ILATFIEVLD PFDLPFFLNQ IYQKYQNNLG KQTLKIQESV ASFCINYLYS ASQNRNIGST NKAIQLLTQL TEYPELGIEK IIGYYYHCYF TNQKEQLKTI ITILKKSNLS KTINILPQ
|
| |