| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1289 |
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| Symbol | |
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| ID | 4439513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1282528 |
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| End bp | 1283601 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 639673122 |
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| Product | spermidine/putrescine-binding periplasmic protein |
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| Protein accession | YP_815090 |
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| Protein GI | 116629918 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00000830378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 82 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT TATTGATTGG AATTTTTGCT ATTCTAGCAG TTTGCTTGGG ATTAGAGGCT
TGGGCTAAGC AGTTAGATAA TAGCGGTGTT AGCGCCAATA ATAAGAATTT AATTATTTAT
AATTGGGGTG ATTATATTGA TCCTAAATTG ATAAAAAAAT TCGAAAAGCA AACTGGCTAT
CATGTAATTT ATGAAACTTT TGATTCTAAT GAAGCTATGT ATACGAAGAT AAAGCAAGGA
GGCACCGCTT ACGATATTTG TGTTCCTTCG GATTACATGA TTTCGAAAAT GCGAAAGGCT
AAGTTACTTG AGAAAATTGA TACCAAAAAA ATTCCAAATT ATAAAAATAT TGGGAGTGAA
TTTTTGCATC ACTCATTTGA TCCTAAGAAT ACTTATTCAG TCCCGTATTT TTGGGGAACT
TTAGGAATTG TATATAATGA TAAGTTTGTA AAACCGGGAC AAATAAAGCA CTGGAACGAT
CTTTGGTCAA AAAAGTATCG TCATAATATT TTATTAGTTG ATTCTGCTAG AGATATTATG
GGACTTTCAT TAGCATCGAT GGGAAAGTCG TTAAATACTA CTAATTCATT AGATCTTAAA
TTAGCTAAAA CTAAATTAGA TGGATTAGGT CCCAATGTAA AAGCGATTAT TTCTGATGAG
CTAAAAATGT ATATGATTCA GAATGAGGCA GCAGTTGGTG TAACATGGTC TGGCGAAGCG
CGGACAATGT TAAGTGATAA TAAGCATTTA CATTATGTGG TTCCACCAGA AGGTTCAAAC
TTGTGGTTTG ATAATTTTGT TATTCCTCGC ACTGTCAAAA ATAAAGCAGG AGCATATGCT
TTTATTAATT TCATGCTTGA TCCAAAAAAT GCTGCTCAAA ATGCGGAGTA TATTGGTTAT
GCAACGCCAA ATATCAAAGC TCAAAAATTA TTACCTAAAG AGATAAAAAA CGATAAGCAA
TTTTATCCAA GTAAACAAGC AATGAAAAAT TTACAAGTCT ATCAGGATTT AGGTCCTAAG
AAAATTCAGG AATATAATGA TCTATTTCTT GAATTTAAAA TGTATGGTCG ATAA
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| Protein sequence | MKKLLIGIFA ILAVCLGLEA WAKQLDNSGV SANNKNLIIY NWGDYIDPKL IKKFEKQTGY
HVIYETFDSN EAMYTKIKQG GTAYDICVPS DYMISKMRKA KLLEKIDTKK IPNYKNIGSE
FLHHSFDPKN TYSVPYFWGT LGIVYNDKFV KPGQIKHWND LWSKKYRHNI LLVDSARDIM
GLSLASMGKS LNTTNSLDLK LAKTKLDGLG PNVKAIISDE LKMYMIQNEA AVGVTWSGEA
RTMLSDNKHL HYVVPPEGSN LWFDNFVIPR TVKNKAGAYA FINFMLDPKN AAQNAEYIGY
ATPNIKAQKL LPKEIKNDKQ FYPSKQAMKN LQVYQDLGPK KIQEYNDLFL EFKMYGR
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