| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1248 |
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| Symbol | prfA |
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| ID | 4439538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1246122 |
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| End bp | 1247210 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639673085 |
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| Product | peptide chain release factor 1 |
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| Protein accession | YP_815055 |
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| Protein GI | 116629883 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0216] Protein chain release factor A |
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| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAAG TAATGGCTCA GTTGGAAGGA TTAGTTGCCC ATTATGAAGA ACTTCAAGAA
ATGATGGCCG ATCCGGAAGT TATTAATGAT ACTAAGCGCT ATATGGAGAT TTCTAAAGAA
GAAGCTGATA TGCGTGAAGT AGTACAAAAG TATCGAAAGT ACAAGTCTGA TATAAAGGAA
ATTGATGATA ATAAAGAAAT CATTTCAAGT GAGTCTGATG ATGATTTGGT TGAAATGGCT
AAGGAAGAAA ATTCTGAATT AGAAAAAGAA GTTGCTAAAT TAGAAGATGA AATTAAAATT
TTGATGCTTC CTAAGGATCC CAATGATGAT AAAGATATCA TTATGGAAAT TAGAGGAGCT
GCTGGTGGGG ATGAAGCATC CTTATTTGCT GGTGATTTAC TCAGAATGTA TGAAAAATAT
GCTGAGACTC AAGGCTGGAA AGTATCTTTA ATTGACTCAG AGCCAACTGA AGTAGGGGGC
TATAAGCGTG TTGCCGTTAT GATTACCGGC GATAAAGTTT ACTCAAAATT AAAGTATGAA
AATGGTGCTC ACCGTGTTCA ACGTGTACCT GTAACTGAAT CTCAAGGTCG TGTTCACACT
TCAACTGCGA CAGTTGCAGT TATGCCAGAA TATGAACAAG TAGATATTGA TTTAGACCCT
AAAGATATTC GTGTGGATGT TTATCGTTCA TCTGGTGCCG GTGGTCAGCA CATTAACAAA
ACTTCTAGTG CTGTTCGTAT GACTCACCTT CCAACTGGAA TTGTGGTTGC TATGCAAGAT
CAACGTAGTC AACAACAAAA CCGTGAAAAA GCAATGCAAA TTTTAAAATC GCGTGTTTAT
GATTATTACG AAAGTCAAAA TCGTGATAAG TACGATGCTA AAAGAAAAGA TGCAGTCGGT
ACTGGGGACC GTTCAGAAAG AATTAGAACA TATAATTATC CTCAAAATCG TGTAACTGAT
CACCGAATTG GCTTAACTTT GAACAAGCTT GATCGAGTAA TGAACGGCGA ACTAGATGAG
ATTATTAATG CCTTAGTTCT TTACTACCAA ACCCAACAAC TAGAAAAGAT GGCTGAAGAA
AATGCCTAA
|
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| Protein sequence | MDKVMAQLEG LVAHYEELQE MMADPEVIND TKRYMEISKE EADMREVVQK YRKYKSDIKE
IDDNKEIISS ESDDDLVEMA KEENSELEKE VAKLEDEIKI LMLPKDPNDD KDIIMEIRGA
AGGDEASLFA GDLLRMYEKY AETQGWKVSL IDSEPTEVGG YKRVAVMITG DKVYSKLKYE
NGAHRVQRVP VTESQGRVHT STATVAVMPE YEQVDIDLDP KDIRVDVYRS SGAGGQHINK
TSSAVRMTHL PTGIVVAMQD QRSQQQNREK AMQILKSRVY DYYESQNRDK YDAKRKDAVG
TGDRSERIRT YNYPQNRVTD HRIGLTLNKL DRVMNGELDE IINALVLYYQ TQQLEKMAEE
NA
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