| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0350 |
|---|
| Symbol | |
|---|
| ID | 4440281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 374678 |
|---|
| End bp | 375973 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639672208 |
|---|
| Product | deoxyxylulose-5-phosphate synthase |
|---|
| Protein accession | YP_814193 |
|---|
| Protein GI | 116629021 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.00175202 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC ATCCAGAATT TTTATTGAAC AAAATCGAAA ATCCAAAAGA TCTTAAAAAA
TTAGACTTAA AAGAGCTAGA ACAATTAGCT AGCGAGATTA GAACGCTAAT TCTAGAAAAA
GATGCTGCAG AAGGTGGCCA CCTTGGTCCT GACCTTGGAA TTGTCGAAGC TACAATTGCC
TATCATTATG TTTTTGATGC ACCAAAGGAC AAGATTATTT GGGACGTTTC TCACCAAACT
TATCCACATA AGATGTTAAC AGGTCGTGCT TATGCCTGGC TTGATCCAGA TAAGTACGAA
GATGTAACTC CTTATTCAAA TCCCGATGAA AGTCCATATG ACTATTATGC AGTAGGTCAT
ACATCTACTT CTGTTGCCTT AGCTACAGGG ATGGCTAGAG CGCGTGATAT GATGGGTAAT
CATGAAAATA TTACTGCCTT AATTGGGGAT GGTTCATTAA CTGGTGGTTT AGCTTTTGAA
GGCTTCAATA ATGCAGCTGA TGAAAAGCAC AATTTAATTA TTGTTGTTAA TGATAACCAA
ATGTCTATTG ATGACAATGT TGGTGGCGTA GTTACTGCCC TAAAGAAATT ACGTGAGTCA
AACGGTCAAG CTGAAGACAA CCCATTCACA GCTATGGGGC TTGATTACAA ATACGTTGGT
CAAGGGAACG ATATTAAATC TATGATCGAT GCCTTCAAGG CAGTTAAGGA TATTGATCAT
CCAATCGTTT TACATATTAA TACTCTCAAG GGTAAGGGTT ATGAACCAGC CATTGAAAAT
GAAGCTAGTC ACCACTGGGT TCTTCCTTTT GACCTTAAGA CCGATAAACC TACAGTTCCT
GCACCTAAGA CGCCAAATGC AAGTACTGTA ATTCTCGACT TTTTAAAGAA ACATATTGAA
AATCAAGAAA ATATTCTTGT AATCAATGCT GCTATTCCAG GCGTCTTCGG CTTAGGTGAA
ATTAAAAATA ATTATCCTAA GAACTACAAA GATGTAGGAA TTGCTGAACA AGAATCTGTT
GCCTTTGCTG CCGGTGCTGT TAAGGAAGGC ATTACGCCAA TTTTATTTGA AAATTCCACT
TTCTTACAAC GCGCATATGA TCAACTTTCT CACGATGTTG CAGCTAACGA TTTACCAGTT
GTAATGATTG TTGCTGGTGG CGGAATTACT GCTGCTTCTA AGACCCACTT AGGTATTTTC
GACAATACCA TGGTTGCAAA TTGGCCAAAC TGGGAATACT TAGCACCTAC TACTTTAAAT
GAATTAAAGT CAATGCTTGA ATGGGCAGTT AAGTAA
|
|---|
| Protein sequence | MNKHPEFLLN KIENPKDLKK LDLKELEQLA SEIRTLILEK DAAEGGHLGP DLGIVEATIA
YHYVFDAPKD KIIWDVSHQT YPHKMLTGRA YAWLDPDKYE DVTPYSNPDE SPYDYYAVGH
TSTSVALATG MARARDMMGN HENITALIGD GSLTGGLAFE GFNNAADEKH NLIIVVNDNQ
MSIDDNVGGV VTALKKLRES NGQAEDNPFT AMGLDYKYVG QGNDIKSMID AFKAVKDIDH
PIVLHINTLK GKGYEPAIEN EASHHWVLPF DLKTDKPTVP APKTPNASTV ILDFLKKHIE
NQENILVINA AIPGVFGLGE IKNNYPKNYK DVGIAEQESV AFAAGAVKEG ITPILFENST
FLQRAYDQLS HDVAANDLPV VMIVAGGGIT AASKTHLGIF DNTMVANWPN WEYLAPTTLN
ELKSMLEWAV K
|
|---|
| |