Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0343 |
Symbol | |
ID | 4440596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 367171 |
End bp | 368874 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 639672202 |
Product | cellobiose-specific PTS system IIC component |
Protein accession | YP_814187 |
Protein GI | 116629015 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1440] Phosphotransferase system cellobiose-specific component IIB [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00394] phosphotransferase system, lactose specific, IIC component [TIGR00410] PTS system, lactose/cellobiose family IIC component [TIGR00853] PTS system, lactose/cellobiose family IIB component |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000105406 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.00000748526 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATGGGT TGGTAAAAAG AATTGAAAAA GCGCAGCCAT TCTTTAGAAA AGTTGCGACT AATCAATATT TAAGAGCAAT TCGTGATGGC TTCATCGCGT TAATGCCAAT TATTATCTTT TCAAGTTTTT TCTTGTTAAT TGCTAATGTG CCCCAAATTT GGGGATTTGT TTGGCCTAAA AAAGTAGCTA CAGCTTTAAA TTTATTTTAT AACTTATCAA TGGGCTTTTT GTCCTTAATG GCGGCTTCTA CTGTAGCCAA GGCCTTAACT GGAAGTTTAA ATCTAAAGTT GCCAAAAACT AATCAAATTC CAGTTGCTGG AGTTCAATAT ACGGCTCAAA TTTCTTTTGC ATTTGTGGCA ATAGATACTT TATTAAATAA AGGAAATTTA TATTTAGCTA CTGATATGAT TGGGACTAAA GGATTAATTT GTGCCTTCTT AGTAGCATTT ATTGTACCTA ATATTTATTA TTTTTGTTTT AAACATAATG TCACAATCAC GCTACCTGAT GTAGTACCTC AAAATATTGC GCAAGCCTTT AAAAATATTG TTCCCTTTGC TATAGCAACT ACTTTCTTTT GGGCATTTAC GTTAATTTTT AGAGCTTTAA CTAATATGAA TTTGGCAGCT TGGATAATTA AAAGTCTAAC TCCACTTTTT ACTGCAGCGG ATGGGTATGT TGGATTAGCA ATTATTTATG GTGCAATGGC GTTCTTCTGG TTTATCGGAA TTCAAGGGCC CTCAATCGTT GAACCAGCAG TTACGGCAAT CTACTTAACT AATGTTGAAG CTAATTTAAG AGCATTTAAT TCAGGAAATA TTCAAGGCGC TAATCACATT TTGTCACAAG GAATTCAAAT GTTTGTTGCT ACTTTAGGAG GAACTGGAGC AACTTTAGTA GTAACGTTTA TGTTTGCCTT TTTGTCTAAA TCTAAACAAT TAAAAGCAGT TGGACGTGCA TCAACAATTC CAGTTATTTT TGGTGTTAAT GAACCTATTT TATTTGGTGC TCCACTGATC TTGAATCCAA TTTTCTTTAT CCCTTTTATT TTTGCGCCAA TTCTTAATGT TTGGATCTTT AAAATTTTTG TTGATGTGCT TCATATGCCG TCATTTATTT ACAACTTACC ATGGACCACG CCACCAACAT TAGGATTGTG GATGGGAACT GGTTTTAATA TTTTAGCTTT ACTATTAGGA ATTTTATTAC TAGTAGTTGA TTCATTATTG TATTATCCAT TTTTTAAGGC TTATGATGCT TCAATGCTAG CCCAAGAAGA GAAAAAGGAA GAACTTGAAG AAAAAGATAA TAAGAAATCT GTTGTATCAT CTGCTGAGCC TAAATTTAAT GAATCTGAGA TTCCACTAGG CAAAACTAAA GATCAACAAG CACTAAATGT TTTAGTTTTA TGTGCTGGTG GTGGGACATC TGGAATTTTA GCTAAGTCAC TTAATAAATT AGCTAAAGAA GACAAGTTAC CTTTAAATGC AGCAGCTGCC GCATTTGGAT CACATCATGA TTTAATATCT GGAATGGATG TAGTAATTTT AGCGCCGCAA ATGGATACCA TGAAAGATGA ACTTGCAAAG GAATGTAAGC AAAATAATGC TCGTATGATT ACCACTACTG GAAAACAATA TATTTACATG ACGCAACATG CTAATGAATG TTTGAAGCTA TTAATCAATG ATATTAATAA ATGA
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Protein sequence | MDGLVKRIEK AQPFFRKVAT NQYLRAIRDG FIALMPIIIF SSFFLLIANV PQIWGFVWPK KVATALNLFY NLSMGFLSLM AASTVAKALT GSLNLKLPKT NQIPVAGVQY TAQISFAFVA IDTLLNKGNL YLATDMIGTK GLICAFLVAF IVPNIYYFCF KHNVTITLPD VVPQNIAQAF KNIVPFAIAT TFFWAFTLIF RALTNMNLAA WIIKSLTPLF TAADGYVGLA IIYGAMAFFW FIGIQGPSIV EPAVTAIYLT NVEANLRAFN SGNIQGANHI LSQGIQMFVA TLGGTGATLV VTFMFAFLSK SKQLKAVGRA STIPVIFGVN EPILFGAPLI LNPIFFIPFI FAPILNVWIF KIFVDVLHMP SFIYNLPWTT PPTLGLWMGT GFNILALLLG ILLLVVDSLL YYPFFKAYDA SMLAQEEKKE ELEEKDNKKS VVSSAEPKFN ESEIPLGKTK DQQALNVLVL CAGGGTSGIL AKSLNKLAKE DKLPLNAAAA AFGSHHDLIS GMDVVILAPQ MDTMKDELAK ECKQNNARMI TTTGKQYIYM TQHANECLKL LINDINK
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