Gene LACR_1843 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLACR_1843 
Symbol 
ID4433472 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactococcus lactis subsp. cremoris SK11 
KingdomBacteria 
Replicon accessionNC_008527 
Strand
Start bp1735326 
End bp1737068 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content38% 
IMG OID639667546 
Product1-deoxy-D-xylulose-5-phosphate synthase 
Protein accessionYP_811443 
Protein GI116512536 
COG category[H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism 
COG ID[COG1154] Deoxyxylulose-5-phosphate synthase 
TIGRFAM ID[TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGTTT TAGAAAAAAT AGACAGCCCA GCAGATTTAA AAAATATTTC AAATGAAGAA 
TTAGAAGAAT TAGCTTCAGA AATTCGAGCA GCAGTCCTTC ACAAAGTATC AAATGTCGGT
GGTCACGTTG GTCCAAATTT GGGCGTGACT GAATTAACAA TTGCCCTTCA CAAAGTTTTC
AATTCACCAG TTGATAAGTT TATTTGGGAT GTTTCCCACC AAACTTATCC ACACAAAATT
TTGACTGGAC GTAAAAATGG ATTTACTGAT GGACATTTCC ATGACATTAC TCCTTATACC
AGTCAAAGAG AGTCTGAGCA CGACTTTTTC ACGGTTGGAC ATACCTCAAC ATCCATTGCT
AATGCCTTAG GTTATGCCAA ACCGCGTGAT TTGACAAAGG ATAAAGGAAA TATTATTGCG
GTAATTGGCG ATGGTTCAAT TTCAGGTGGA CTTGCTATGG AAGCTCTCAA TAACGCTGGA
GATTTCCAAG GAAACCTGAT CATTTTATTC AATGATAATC AAATGTCAAT TGCTGAAAAC
CATGGGGGAC TTTACCGTAA TCTAGCCGAA CTTCGGGAGA CAAATGGTCA AGTTGAAAAT
AACTTCTTTA AAACATTTGG TTTAGATTAT AAATATTTAG AAAATGGAAA TGATATTGAA
TCACTTGTCA ACTTATTTGA AGAAGTAAAA GATATTGACC ATCCAATCGT TCTTCATATT
CATACTGAAA AAGGTCGCGG TTACCAACCA GCCCTTGAAA ATAAGGAAGC TTTCCACTGG
CATATGCCCT TTGATCTTGA AACAGGTCAA TCGAAAGTGA CTGATTCTGG CAAATCTTAT
AGCTCTATCA TGTTAGATTA CATGGACAAA AAAGTTTCAG AAGGTTTGCC ACTTGTAGCT
ATCAATGCAG CAATCCCTGG AATTTTTGGC TTGAAACAAT TTGCAGCTAA ATATCCAGAC
CGTTATATTG ATGCTGGAAT TGCCGAACAA TTTACCATAA CATTTGGTGG GGCAATGGCT
GCAGCTGGTG CTCGTCCAAT CATTTTCCAC AATTCGACCT TTGTGCAACG AGCTTATGAC
CAATTTTGGC ATGATTTAGC AATTAATGAA GAACCAGCGA TTGTCATTGT TAAAGGTGGG
GTTATTTCAG GTTCAGATGA AACGCACCAA GGCTCATCAG CCATGACTTG GATTTCAAAC
ATTCCAAATA TCAAATATCT TGCTCCAACA TCTGAAGAAG AGTTCATTTC AATTCTCGAT
TGGGCACTTG ACCAACATGA AGAACCAGTC GTTATTCAAA TGCCAGAACA TGGATTAGAA
TCACGTCCAA CAGTTCTAAC AGATTTTTCG ACGAGTTCAT ATCAAATGAC AAAAGCTGGT
GAAAAAGTTG CCATTTTGGC TCTTGGTGGA CTTTATTCAC ATGGTGAAAA AGTCGCTAAG
ATTTTAGCTG AAAATGGAGT TAATCCTACA CTTGTTAATC CAATTTTCAT CAATGATTTG
GACCAAGCTT TCCTTGAAAA CTTAGTTGAA AATCATCAAG TGATTGCCAC TATCGAAGAT
GGAATTCTTG ACGGAGGATT TGGTCAAAAA GTAGCCTCAT TCCTCGGGAA ATATGATGTG
AAAGTTTTAA ATTTTGGAGC GAAACGTGAA TTTAATGATT CTGTTCCTGT TGCTGAACTT
TATGACCGCT ACCACCTTAC CCCTGAATTG ATGGTTGCTG ATATTCTGAG CCTTTCAAAA
TAA
 
Protein sequence
MSVLEKIDSP ADLKNISNEE LEELASEIRA AVLHKVSNVG GHVGPNLGVT ELTIALHKVF 
NSPVDKFIWD VSHQTYPHKI LTGRKNGFTD GHFHDITPYT SQRESEHDFF TVGHTSTSIA
NALGYAKPRD LTKDKGNIIA VIGDGSISGG LAMEALNNAG DFQGNLIILF NDNQMSIAEN
HGGLYRNLAE LRETNGQVEN NFFKTFGLDY KYLENGNDIE SLVNLFEEVK DIDHPIVLHI
HTEKGRGYQP ALENKEAFHW HMPFDLETGQ SKVTDSGKSY SSIMLDYMDK KVSEGLPLVA
INAAIPGIFG LKQFAAKYPD RYIDAGIAEQ FTITFGGAMA AAGARPIIFH NSTFVQRAYD
QFWHDLAINE EPAIVIVKGG VISGSDETHQ GSSAMTWISN IPNIKYLAPT SEEEFISILD
WALDQHEEPV VIQMPEHGLE SRPTVLTDFS TSSYQMTKAG EKVAILALGG LYSHGEKVAK
ILAENGVNPT LVNPIFINDL DQAFLENLVE NHQVIATIED GILDGGFGQK VASFLGKYDV
KVLNFGAKRE FNDSVPVAEL YDRYHLTPEL MVADILSLSK