Gene Ksed_25230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_25230 
Symbol 
ID8374026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp2600567 
End bp2602909 
Gene Length2343 bp 
Protein Length780 aa 
Translation table11 
GC content76% 
IMG OID644992748 
Producthelicase family protein with metal-binding cysteine cluster 
Protein accessionYP_003150251 
Protein GI256826291 
COG category[R] General function prediction only 
COG ID[COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones63 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGGCG CACCCCACAG CACGTCCCCC GAGGACTGGC TGTCCCTGCT CACCACCGGG 
GGCCTGACCG ACCGCCTCGT CCACACCGAG ACCCATCCCG CTCGTGATGC GGTGACCGCG
CCGCTGCCCG ACTGGCTCAA CCCGCAGGTC GAAGCAGCCC TGGCCGGGGC CGGCATCGAC
CAGCTGTGGT CCCACCAGGC CGAGGTGGCC GAGCACGCCC ACGCCGGGCG GCACACGGTG
GTGGCGACCG GCACCGCATC GGGCAAGTCA CTGGCCTACC TGCTGCCCGT GCTCTCCGCG
CTGGCCGACG GCGCCCACCA CGTCACCGGC CGTGGGGCCA CGGCCCTGTA CCTCGCACCG
ACCAAGGCCC TGGCGCAGGA CCAGCTGGCG GCGGTCGAGC GGTGGATGGT CCCCGGCATC
CGCGCGGCGG TGGTCGACGG CGACACCCCC ACCGAGGAAC GCACCTGGGC CCGCCAGCAC
GCCAACTACG TGCTCACCAA CCCCGACCTG GTGCACCACT CGCTGCTGCC CGGCCACGAG
CGGTGGCGCG CCTTCCTGCG CCGGCTGCAC TACGTGGTGG TCGACGAGTG CCACGTGCAC
CGCGGGGTGC CCGGTGCCCA CGTCGCGCTG GTGCTGCGGC GCCTGCTGCG CATCGCCCGC
CGCCACGGCA CCGAGCCCAC CGTGCTGCTC GCCTCGGCCA CCGTCGCCGA CCCGGCCGAC
CACGCCAGCC GCCTGCTCGA CGCCCCGGTG CAGGCCGTCA CCCAGGACGG CTCCCCCCGC
GGGGAGGTCA CCTACGCCCT GTGGGACCCC CAGCCCGAGG CGGGGGACGG CCGCCCCTCC
ACGCTCACCG AAGCCGCCCG CATCAGCGCG CGCCTGATCG AGGCGGGGCG CCAGGTGCTC
ACCTTCACCA CCTCGCGCGT GGGTGCGGAG GTGACCGCGC GGGTGGTCGC CGACCAGCTC
GAGTTCACGG GCACCGGCAG GGGCACCGGA GCCGAGGGGG ACGCACGGGC CGCCGGGGCC
CCCGCGATCG CCGCCTACCG GGGCGGCTAC CTGCCGGAGG AGCGTCGCGC CATCGAGCGG
GGGCTGCGCG ACGGCACGCT CCGGGGGGTG GCCGCGACGA CGGCCCTGGA GCTGGGCATC
GACGTCTCCG GGCTCGATGC GGTGGTGATG GCCGGGTGGC CCGGGCGGCG GGCGAGCTTC
TGGCAGCAGG CCGGGCGCGC GGGGCGTTCG GGGCAGCCCG CGCTGGCCGT GCTCGTGGCC
GGCGACAACC CGCTGGACCA CTACCTGGTG CACCACCCCG AGGGGATCTT CTCCGGCGCC
CTGGAGGCCA CCGTGGTGGA CCCCTCCAAC CCGCGGGTCC TGGCCGAGCA CCTCGCCTGT
GCGGCGGCGG AGCTCCCGCT GACGGAGGCC GACTCGCTGT GGTTCGGGCC GGGGACCGCC
CTGGTGCGCG ACTCCCTGGT CCGCGCCGGG ATGCTGCGCG AGCGGCCCAC CGGCTGGTAC
TGGGCGGGCT CCGAGCGTCC CCACGGCCTG GTGGACCTCC GCGGCATGGC CGGCACCCTG
CAGCTGCTGG AGAGCCGCAC CGGCCGGGTG CTGGGCACCA TCGACGCCGG CCGCGCGGAC
TCCACGGTCC ACACCGGCGC GGTGTACCTG CACCAGGGCA CCACCCACGT GGTCACCGAG
CTCGACCTGG ACGACGGCGT GGCCACGGTG GTGGAGGGTG ACCCCGGGTG GATCACGCGC
GCGGTCACCG AGGAGGCCTT CGACGTCACG GCCGTGCGCG ACCGGGCACC GGGCGACGGC
GTGGAGTGGT CCGTCGGGGA CGTCCTGGTG CGCACGCACG TGACGGCCTT CCGCCGCCTG
CTGCCCTCCG GGGAGGTGCT GGGGCAACAC CCACTCGACC TGCCCGAGCG CACCATGCCC
ACGCAGTCGG TGTGGTTCAC CCTCACCCCC GAGGTGCTTG CCGACGCCGG GGTCGATGAG
GTGGAGCTGC CGGGTGCGCT GCACGCGGCG GAGCACGCCC TCATCGGCAT GCTGGGGCTG
GTGGCCACCT GCGACCGGTG GGACGTCGGC GGGGTCTCCA CCCCCCTCCA CCCGGACACG
GGCCTGCCCA CCGTGATGGT CCACGACGGC CACCCCGGCG GGGCGGGCTT CGGCGACCGC
GGGTTCGCCG CGCGCCGTCC CTGGGTGGAG GCCACCCTCG ATGCGGTGCG CCGCTGCCCG
TGCGACGCGG GGTGCCCGGC GTGCGTGCAG TCCCCCAAGT GCGGGAACAA CAACGAGCCA
CTCTCCAAGG AGGGCGCCGT GAGGGTGTTG CAGGTCCTCG CAGCACAGTG GTCGGCGCAG
TAG
 
Protein sequence
MPGAPHSTSP EDWLSLLTTG GLTDRLVHTE THPARDAVTA PLPDWLNPQV EAALAGAGID 
QLWSHQAEVA EHAHAGRHTV VATGTASGKS LAYLLPVLSA LADGAHHVTG RGATALYLAP
TKALAQDQLA AVERWMVPGI RAAVVDGDTP TEERTWARQH ANYVLTNPDL VHHSLLPGHE
RWRAFLRRLH YVVVDECHVH RGVPGAHVAL VLRRLLRIAR RHGTEPTVLL ASATVADPAD
HASRLLDAPV QAVTQDGSPR GEVTYALWDP QPEAGDGRPS TLTEAARISA RLIEAGRQVL
TFTTSRVGAE VTARVVADQL EFTGTGRGTG AEGDARAAGA PAIAAYRGGY LPEERRAIER
GLRDGTLRGV AATTALELGI DVSGLDAVVM AGWPGRRASF WQQAGRAGRS GQPALAVLVA
GDNPLDHYLV HHPEGIFSGA LEATVVDPSN PRVLAEHLAC AAAELPLTEA DSLWFGPGTA
LVRDSLVRAG MLRERPTGWY WAGSERPHGL VDLRGMAGTL QLLESRTGRV LGTIDAGRAD
STVHTGAVYL HQGTTHVVTE LDLDDGVATV VEGDPGWITR AVTEEAFDVT AVRDRAPGDG
VEWSVGDVLV RTHVTAFRRL LPSGEVLGQH PLDLPERTMP TQSVWFTLTP EVLADAGVDE
VELPGALHAA EHALIGMLGL VATCDRWDVG GVSTPLHPDT GLPTVMVHDG HPGGAGFGDR
GFAARRPWVE ATLDAVRRCP CDAGCPACVQ SPKCGNNNEP LSKEGAVRVL QVLAAQWSAQ