Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ksed_12540 |
Symbol | |
ID | 8372762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kytococcus sedentarius DSM 20547 |
Kingdom | Bacteria |
Replicon accession | NC_013169 |
Strand | + |
Start bp | 1291110 |
End bp | 1292114 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 644991531 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_003149051 |
Protein GI | 256825091 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.00205236 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.478593 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCGAGC CCCCGGGCAC GGGTGGTGCA GCGGGCCGGG CGCCGCACGC GGTCGTCGTG GGTTCCCCGG TGGCGCACTC GCTCTCGCCG CTGCTGCACC GTGCGGCCTG GCAGGAGCTG GGTCTGGGGG CGGGGAGCTA CGAGCGCGTC GAGGTGCCCG CGGGAGAGCT GGCGCAGAGC GTCGAGCGCC TGCACTCGCG CGAGCAGGTG ACAGCGCTGT CGGTCACGAT GCCGCTCAAG GAGGAGGCCC TCGCCCTGGG GCTCGCGGGC GCGGGTGCGT CGGAGGTGGC CGTCCTGGCC GGCGGGGCGA ACACGCTCGT GCTGGGCGGT GACGGGTGGG CCGCGAGCAA CACCGACGTG CCGGCGCTGG CGCGCGTGAT CGGCCGGGCC TGCGGGCAGC GGTCCACTCC GGGGGCCGAC CCGGCCGCAC CGCACGAGTC CGAAGTGGTG CCGGGGGAGG TAGTGCTGCT CGGGTCGGGT GCCACGGCCC GTTCGGGGCT GTTGGCGCTG CACTGGTGCG GCGCGCGGGA GGTCACGGTG GCGGTGCGCG ACGCGGTCCG CCGGGACTTC TCGCGGCTGG CCGACGAGCT CGGCATCCGG GTGGCGGTGG TGCGCCTGGA CGCCCTGGCG CCGACGCTGC GCGAGGCGAC GGCTGCACCG GGCAGCCTGC TCGTGGTGAA CACCCTGCCC GCCGGCTGGT GGGAGACCCT GGCGGCGCCC GCCTGGGCAC CCGGTGGGCG GGCGCACGGG GGGCTGCACC AGCGGGACGC CCCCGGGCCG GATCACCCGG CGGCGGGGGT CGTGTGGGTG GACGCCCAGT ACGCAGGCTG GCCGCACCCG TGGGCGGCGG CCGCCGAGGA CGCCGGGGCT CAGGTGCTCA GCGGATTGCA CATGCTCGTG GAGCAGGCCG TGGACCAGGT GGAGCTCATG ACCGGCCTGC GCCCCACGGC CGAGGCCACC GCCTCCCTGC TGCCGCCGGA GCTCCGCGCG CTGCATAGGG TGTGA
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Protein sequence | MSEPPGTGGA AGRAPHAVVV GSPVAHSLSP LLHRAAWQEL GLGAGSYERV EVPAGELAQS VERLHSREQV TALSVTMPLK EEALALGLAG AGASEVAVLA GGANTLVLGG DGWAASNTDV PALARVIGRA CGQRSTPGAD PAAPHESEVV PGEVVLLGSG ATARSGLLAL HWCGAREVTV AVRDAVRRDF SRLADELGIR VAVVRLDALA PTLREATAAP GSLLVVNTLP AGWWETLAAP AWAPGGRAHG GLHQRDAPGP DHPAAGVVWV DAQYAGWPHP WAAAAEDAGA QVLSGLHMLV EQAVDQVELM TGLRPTAEAT ASLLPPELRA LHRV
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