| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Krad_0235 |
|---|
| Symbol | |
|---|
| ID | 5335703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kineococcus radiotolerans SRS30216 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009664 |
|---|
| Strand | + |
|---|
| Start bp | 2080469 |
|---|
| End bp | 2082763 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001359989 |
|---|
| Protein GI | 152964205 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.746479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00744793 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGATCGCTC CGGTGCCGCG CACCGCCCAC CTCACCCGCG TCCTGGCCGG GGCCACCGCC
CTGGGCTGCG CCGGGGTGCT CCTGGTGCCG GCCTGGCGCT CCGGCGCCGT CGTGGTGGCC
TCGGTCCTCT CGGTGCTGCT CGTCGCGGTG GGGACCGCGG TGCACCGCCC GCGCGGGGCC
GCGTGGCCGC TGCTGGGCCT CATGCTCGCC CTGTGGGGCG CCGGCGGCCT GCTCGTCCAG
GACCGGGGGC ACCTCGACGC CTGGTCGACG GGGCTGGTCT GGGCCGGGCA GGCGGTGGCC
GCGGGCGTCG TCGCCCACGT GGGCCGCAGC GCCGCCCGCC GCTCGGAGCG CTCCGCCGGG
GACCGGCTGG ACCTCGTGGT CACCGCGACC GTCCTGGCCC TCGTCGCCGC CCAGCTCGTC
GCGGTCGTCG TCGCCGGCCG CGGGGACGCC GGAGGGGTCG CGGTGGCCAC CGTCGACGTC
GTGCTCCTCG GCGTCCTCGT CCGGTTCACC CTGACCCGCC GCGGCCTGAG CACCAGCTCC
CGGCTGCTGC TCGTCGGCGC CCTGCTGACC ATCGCCTACG ACCTGACCTC CGCCCTGCAC
GGGCGGCGGC TGGCGCTGCC GGGCGAGCCC GCGCAGGTCC TGGGGGTGTC CTGCGTCCTC
GTCCTGGGCC TGGCCGCGCT GCACCCGACG ATGACGCGGG CCTTCGCCGC GGAGACGTTC
GCGCGGGGCC GCCGGCCCTC CGGCGCCCTG CTGGGGATGC TGCCGCTGGT GCTCGTCCCC
GCCGCGACCT GGGGGGTGGC CCGGGTCAGC GGCGTCCCCG GGCTGCCGGG GTGGACGGTG
CCGGTGACCG GGGCGGTCGT GGCCGGGCTG TGCCTGCTGC GCGCCGCGGC CGCGCTGCGC
TCCAGCGAGC ACCTCGCCGA GCACGACCCC CTGACCGACC TCGCCAACCG CCGCGGCCTG
GAACGGGCCT ACGACGAGCG GGACCCCGGC GTCCCGCACA GCCTGCTGCT CATCGACCTC
GACGAGTTCA AGCAGGTCAA CGACACCCAC GGGCACGACG TCGGCGACGC CCTGCTGCGG
GAGGTCCGCG ACCGCCTGAC CGGGGCCGCC GCCCCCTCCG GGCTGGTGGC GCGCCTGGGC
GGTGACGAGT TCGTCGTGCT CGTGCCGACC GCCGACGCCG AGGCCGTCGC CCAGCGGGTG
CTGAACCACC TCGAGGCCCC CGTCGTGGTG GACCACCTGG TGCTGCGGGT GGGGGCCAGC
GTCGGCCTCG CCGACGACGA GTCCCCCGAC GGCGGGCTCC TGCCGCTGGC CGGGCTCCTC
ACCCACGCCG ACGTCGCCAT GTACGCCGCC AAGGGCGCCG GCGGGGGGCG GGTCGCGCCG
TTCCACCCCG ACCTGCGCTC GGCGGTGGCC CACCGGTACA CCCTCGGCGG GGAGATCCGT
CAGCTGCTGG CCGGGCGGGC ACCGGAGGTG AGGCACCTGG AGATCCACTA CCAGCCGCTG
GTGGACCTGC GCTCGGGACG GGCGGTGGGG GCGGAGGCGC TCGTCCGCTG GCGGCACCCG
CTGCGGGGCC TGCTCAGCCC GGGGGAGTTC CTGGAGCTCG TCAACGACAA CGACCTGGAC
AGCACCCTGG ACACCGTGGT CCTCGACGAC GTGCTCGACC AGGTGGCCCG CTGGCGCGAC
CAGGGCCGCG CCGTCCTGCC CGTCAGCGTC AACCTCACCC CCGACAGCCT GCGCGAGGAG
GACCTGGCGG CGCGGGTGCT GGCGTCGCTG GCCCGGGCCG GGGTCCCCGC CCCCCTGCTG
CACCTGGAGA TCACCGAGCA CGAGCGCCTG CACGAGGACG GGCCCGCCAG CCGCACCCTG
GGGCTGCTGC ACGAAGCGGG CGTCCACGTC CACCTCGACG ACTACGGCGC CGGCTGGACG
TCGCTGGACT ACCTGCGCCG CTTCCCCGTG CGCCTGCTCA AGCTGGACCG CTCCGTGGTC
TCCACCGTCA CCGGCGACGG CGCCCCGCTG GTGGCCGGAG TGCAGGCCAT GGCCGCGGCC
CTGGACCTCG ACGTGCTCGC CGAGGGCGTC GAGACCCCCG GGCAGCGGGA CCGGCTGCTG
GAGCTGGGGA TCCGCTACGG CCAGGGGTAC CTGTTCTCCC GGCCGCTGCC GGCCGCCGAG
TACGCGGAGG GCTTCCTCCC CCCGGCGGAC GCGGACGGCG CGGCGGACCC GGCGGCGGAC
CCGGCGGGGG CCCCGCCCGC CGGGCGGCCC CGCGCCGCGG TGAGCGCGGC GCCGTCCGCC
CCCGCGGCTG GGTAG
|
|---|
| Protein sequence | MIAPVPRTAH LTRVLAGATA LGCAGVLLVP AWRSGAVVVA SVLSVLLVAV GTAVHRPRGA
AWPLLGLMLA LWGAGGLLVQ DRGHLDAWST GLVWAGQAVA AGVVAHVGRS AARRSERSAG
DRLDLVVTAT VLALVAAQLV AVVVAGRGDA GGVAVATVDV VLLGVLVRFT LTRRGLSTSS
RLLLVGALLT IAYDLTSALH GRRLALPGEP AQVLGVSCVL VLGLAALHPT MTRAFAAETF
ARGRRPSGAL LGMLPLVLVP AATWGVARVS GVPGLPGWTV PVTGAVVAGL CLLRAAAALR
SSEHLAEHDP LTDLANRRGL ERAYDERDPG VPHSLLLIDL DEFKQVNDTH GHDVGDALLR
EVRDRLTGAA APSGLVARLG GDEFVVLVPT ADAEAVAQRV LNHLEAPVVV DHLVLRVGAS
VGLADDESPD GGLLPLAGLL THADVAMYAA KGAGGGRVAP FHPDLRSAVA HRYTLGGEIR
QLLAGRAPEV RHLEIHYQPL VDLRSGRAVG AEALVRWRHP LRGLLSPGEF LELVNDNDLD
STLDTVVLDD VLDQVARWRD QGRAVLPVSV NLTPDSLREE DLAARVLASL ARAGVPAPLL
HLEITEHERL HEDGPASRTL GLLHEAGVHV HLDDYGAGWT SLDYLRRFPV RLLKLDRSVV
STVTGDGAPL VAGVQAMAAA LDLDVLAEGV ETPGQRDRLL ELGIRYGQGY LFSRPLPAAE
YAEGFLPPAD ADGAADPAAD PAGAPPAGRP RAAVSAAPSA PAAG
|
|---|
| |