Gene Jden_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_2013 
Symbol 
ID8381172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp2205071 
End bp2205850 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content58% 
IMG OID645004765 
Productflagellar motor switch protein FliN 
Protein accessionYP_003161954 
Protein GI256833227 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCACCC TGCAAACATT CCAAGACAGC GCCAACGCCC TCGTTGAACT GATCCCACAC 
GCAACCCCAC TTCACGCAGC TCTCAGCCCG GTCCCACCGG CTGCCGATGC GACCGAAGGC
ATGGTGACTT ACGGTTACCA GCTAGTCGGG TCAACACACT ACGCATTTGG CCTCTACCTC
GGCCAAGGCA TCATCGACGC GTTGAGTGAC AGCTCTGAAC AGATCAATAC TCGTGCCGCT
GTGCGTCCCG CTCTTGAGGC AGCCGCCCAG CATTTTGGTC AAGGAATCAT CAATGACCTT
GACGAGGCGC CATCATTGAC TGAAGGTATT GCCCCGGTGT CTTTCACCCT CAAGTCAGGG
GACAGCACAG TTGGGTGGAT CACCTTCCAT AACCGTGAGG ATGTACCCGT GGAGAAACCA
TCTCCGGCAG CCTCCGCCCG CACAGCACAA GCAGAGCCAA GCGCACCCAG CCCCACCGAA
CCTGAGATCC GCCCCTTCAC CCCACCCATG ATGGGAAGTG GGACAGGGGA TGACAAACTT
CGGCTCCTGT ACGACGTCGA AATGACTCTG ACCGTTGAAA TTGGGCGAGC AAAACTCCCC
GTACGGCAAG TGCTTGACCT GACCCCCGGT TCCATTGTTG AACTTGACCG AGTCGCGGGT
GCACCCGCAG ACCTCCTCGT CAATGGTCAC CTCGTTGCCC GTGGTGAAGT TGTTGTCGTC
GACGAAGACT ACGGCCTACG CGTTACAGAA ATCATCGACA CCACAGAGGT CTTCTCCTGA
 
Protein sequence
MVTLQTFQDS ANALVELIPH ATPLHAALSP VPPAADATEG MVTYGYQLVG STHYAFGLYL 
GQGIIDALSD SSEQINTRAA VRPALEAAAQ HFGQGIINDL DEAPSLTEGI APVSFTLKSG
DSTVGWITFH NREDVPVEKP SPAASARTAQ AEPSAPSPTE PEIRPFTPPM MGSGTGDDKL
RLLYDVEMTL TVEIGRAKLP VRQVLDLTPG SIVELDRVAG APADLLVNGH LVARGEVVVV
DEDYGLRVTE IIDTTEVFS