| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1769 |
|---|
| Symbol | |
|---|
| ID | 8380933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1930019 |
|---|
| End bp | 1931701 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645004522 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003161715 |
|---|
| Protein GI | 256832988 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0593052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.250375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC AGCGAGAAGG ATCAGGATTG CTGAACGCGC CCATCAACAG GCGCTCATTC
CTTGGCCTAC TGGCGGCGGG GGCAGCCACC ATTGGTGTGC CGTCTCTGCT CGCATCGTGT
GCCCAAAATG AACCCCTGCC CGGTGACTCC ACAACTGGCG GAGGTGGAAC ACCAACCGCC
ACCTCAGATG GATCCATTGC CCCCAGCTAC CAGCCCATCC AATACGTCGA GCCAGACTTC
CCGTCAGTGA ACGGAACCCT GCCGGGGTAC ACGAGCCGTC CAGAACTGGT GCAGGCTTAC
GATGCGCCCC CGGGAAGTGG TGTCACCATT ACCGCCGCAG CACCCACCTG GTCGCCCATC
CCTGACACCA CAGGGCAGTA CTTCACCGCT GTCAACGACG CTATCGGCAA CACCATCGAT
CTGAACCTCC TGTCCGGAAA CGACATCTGG GACATTGCGC AAACACGGCT TGCTGACGCA
AACTCCCTTC CCGACTGGTT CGCACTGCCA ACCTGGACCG TGTCCGGTAA CGCAAAATTC
GGTTCCGAGA TCGCCCCCGC CGTCTTTGAA GACCTCACCC CACACCTCAC CGGGGACAAC
GTCCTGACCT ACCCCCACCT GGCGAATATT CCCACCGAAG CATGGATGAA CTCCAGCTGG
GAAAACAAAA TCTACGCCAT CCCCATGCCA GGTGGTGCGC TCGACATGAC CTACTTCTAC
CGCAAAGATC TCCTGGCAGA CAAAGGCATC ACCGAGGTTG CGCCGACCAC CATCGACGAC
CTCTTCGCCC TGTACAAAGA AATCAACGAC CCAGGCGCTG GACGCTACGC CACCCTCAAC
CCATGGACCG CGCTGACGAA CATTGCGTTT GGAGTGCAAT CCGGGTGGAC AGTCATCGAC
GGCAAGGTTG TCCACCGCAT GGAAACTGAC AACTACTTCG ACTGCCTGGA ATTTGTGGCC
AAATGCTACA AAGAAAACCT CGTCCACCCT GACGACGCTG CAGGCCGTCA AACATTCCTT
GACGGAAACG TGTACTTCAA CGGAGACGGA CTCGGAGGCT GGCGTGAAAT GGTCGCCAGC
CAAGTCGGTG TGAACGACTC CTTCGAGATG GACGCAGTTG TACCGTTCGA CTACAAAGGC
GGCGACCCGG TGTACTGGCG CGCAGCCCCC GCATCCTTCT GGTCCTTCAT CAAAAAAGGA
ATCGGCGAGG AGAAGATCGC AGCCATCCTC GCATCGGCAG ATTTCCTTGC GGCACCGTAC
GGAACAACAG AATACGACCT GGTCGCCAAC GGTGTCGAAG GCGTACACTA CAACCTCGGT
GACGCGGGCG AACCCGTCAA AACCGAACTC GGCAACACCG AAGTGGTCCC TTCCTACATG
TTCCTGGCCT CACCTCCCGG TGTTGCCGCC GACTTCCAAT ACCCCGGATA CGTGGAGTCC
TACTCCGCCT ACTCAGCAGC AGCAGGACAA TACATTCAGT CCTCACCATT CCTGGGCATC
AACGTTGTGG TACCAGACGA ATACCGTGAC ATCGAAGCCG GAATCTCCGA CCTGGAAACC
GAAGTGCAAC GCGGACGCGC ATCCATCGAC GTCATGCGTG AACGCGTCGA CCAATGGCGC
AAAGACGGTG GCGACGCACT ACGCGACTAC TACAAGAACA TTCTCGACGA ACTACCTGCG
TGA
|
|---|
| Protein sequence | MNTQREGSGL LNAPINRRSF LGLLAAGAAT IGVPSLLASC AQNEPLPGDS TTGGGGTPTA
TSDGSIAPSY QPIQYVEPDF PSVNGTLPGY TSRPELVQAY DAPPGSGVTI TAAAPTWSPI
PDTTGQYFTA VNDAIGNTID LNLLSGNDIW DIAQTRLADA NSLPDWFALP TWTVSGNAKF
GSEIAPAVFE DLTPHLTGDN VLTYPHLANI PTEAWMNSSW ENKIYAIPMP GGALDMTYFY
RKDLLADKGI TEVAPTTIDD LFALYKEIND PGAGRYATLN PWTALTNIAF GVQSGWTVID
GKVVHRMETD NYFDCLEFVA KCYKENLVHP DDAAGRQTFL DGNVYFNGDG LGGWREMVAS
QVGVNDSFEM DAVVPFDYKG GDPVYWRAAP ASFWSFIKKG IGEEKIAAIL ASADFLAAPY
GTTEYDLVAN GVEGVHYNLG DAGEPVKTEL GNTEVVPSYM FLASPPGVAA DFQYPGYVES
YSAYSAAAGQ YIQSSPFLGI NVVVPDEYRD IEAGISDLET EVQRGRASID VMRERVDQWR
KDGGDALRDY YKNILDELPA
|
|---|
| |