| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1530 |
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| Symbol | |
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| ID | 8380699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1646183 |
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| End bp | 1647325 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645004280 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003161481 |
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| Protein GI | 256832754 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.85935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGCCCC CGTTGCGCAT CGGTCAGCAT GTCAGTGAAA CCCCCGTTGT CCTCGCCCCC
ATGGCTGGGG TCACCAATAC GGCTTTTCGG CGCCTTTGCC GCGAGCAAGG TGACGGGTTC
TTCGTCGCTG AGATGGTCAC GAGCCGTGCT CTGGTTGAAC GAAACGACGT GTCACTGCGC
ATCGTGTCTT TTGAAGACTA CGAACAACCA CGATCTGCCC AAGTCTACGG GGTCGATCCA
GCAACAGTTG GTGCTGCAGT GAGCATCATT GCCGGCGAGG ATCGCGCTGA TCACATTGAT
CTCAACTTTG GTTGCCCTGT GCCCAAAGTG ACCCGTAAAG GTGGTGGAGC GGCACTCCCG
TGGAAGAAAG AACTGTACAC GCGCATCGTC GATGCAGCCG TCCGCGCGGC TTCACCACAT
CACGTCCCTG TCACAGTGAA GATGCGTATG GGCATTGACG ACGACCACAT GACATACCTT
GAAGCAGGGA AAATCGCCGA AGACCTGGGA GTTTCCGCCG TGGCACTCCA TGCGCGAACT
GCTGCACAGC ACTACTCGGG TCAGGCGCGC TGGGACGCGA TCAAGAACCT CAAAGAACAT
GTCACAACCA TCCCTGTGCT GGGTAACGGT GACATTTGGA GTGCTGAAGA CGCACTGAAC
ATGGTTGCGC ACACCGGATG CGATGGGGTT GTTGTCGGAC GTGGCTGCCA AGGCCGTCCC
TGGCTTTTTG CTGACCTGAC CGCCGCATTT GCCGGGAGAG ACGAACGTGT CACTCCCGGA
TTAGGGTATG TTGCTGAGAC CATTTACCGC CATGGAGAAT ATTTGGTTGA GTTCTTCGGT
GACGAAGGTC GAGGTTTACG TGACCTGCGC AAACACATGG CGTGGTACCT CAAAGGCTAC
GCCGTTGGTG GGGAAGCGCG GCAAGCGCTT GCACTCGTTG ATTCGCTTGC TGACCTGCGC
CGTAAACTCG ACGAACTTGA CCATGATGCC CCGTACCCAG GGGAAGCTGC TGAAGGGCAG
CGCGGCCGAG CAGGAAGCCC GAAGCGCCCG ATTTTGCCGT ATGGGTGGCT TGACTCACGC
GAGCTCAGTG ACGAGTTCCG CATCACACTC CAGGAAGCAG AGTTGTCCGT TTCCGGAGGC
TAG
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| Protein sequence | MLPPLRIGQH VSETPVVLAP MAGVTNTAFR RLCREQGDGF FVAEMVTSRA LVERNDVSLR
IVSFEDYEQP RSAQVYGVDP ATVGAAVSII AGEDRADHID LNFGCPVPKV TRKGGGAALP
WKKELYTRIV DAAVRAASPH HVPVTVKMRM GIDDDHMTYL EAGKIAEDLG VSAVALHART
AAQHYSGQAR WDAIKNLKEH VTTIPVLGNG DIWSAEDALN MVAHTGCDGV VVGRGCQGRP
WLFADLTAAF AGRDERVTPG LGYVAETIYR HGEYLVEFFG DEGRGLRDLR KHMAWYLKGY
AVGGEARQAL ALVDSLADLR RKLDELDHDA PYPGEAAEGQ RGRAGSPKRP ILPYGWLDSR
ELSDEFRITL QEAELSVSGG
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