| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1501 |
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| Symbol | |
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| ID | 8380671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1611023 |
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| End bp | 1614127 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645004249 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003161453 |
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| Protein GI | 256832726 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.573056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.735582 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACG CAGTTGCACG TAAATACGAT CCGATTGCGG TTTCGGCCGA GAGCACCGTC
GTAGCCGAAT ACATCCCAGA TGCGGCATCG CAGGCGGCGT ACCAGTCAGA GTCAGCGCTC
GAGCAAGAGC TGATACGACT TCTCGAATCT CAGGCATACG AGTACCTACC TGTCACATCT
GAAGAACAGT TGGTTGCGAA CCTTCGTAGT CAGCTTGAGG GGCTCAACGG CATCACGTTC
ACCGATTCGG AGTGGGAGCG GTTCTTCACC ACAAGCGTCG CAGGCAAGAA TGACGGCATC
GTTGAAAAAA CAGTCCGTAT TCAAGAAGAC CACGTTCAGA TCCTCAAGCG TGACGATGGT
TCAACGAAGA ACATCACGCT CCTAGACAAG AAGAACATCC ACAACAACCG TCTACAGGTC
ATCAACCAAT ACGAGATTGG CAGCGGCGAA GGGGGCGCAA ACTACGCCAA CCGCTACGAC
GTGACCGTCC TAGTCAACGG CCTCCCCATG GTGCACATCG AACTCAAACG CCGAGGCGTG
GATATTCGCG AAGCGTTCAA CCAGATCAAC CGCTACCAGC GCGACAGTTT CTGGGCTGGC
TCCGGTCTGT TCGAATACGT GCAGTTGTTT GTGATCTCCA ACGGCACGCT CACGAAGTAC
TACTCCAACA CCACCCGCTC CTCACACCTA AAAGAAGCCG CCAAACCAGG TAAAGGCCGG
AAGACGTCAA ACTCCTTCGA ATTCACCTCC TGGTGGGCAG ACGCACAGAA CAAACCGATC
ACAGACCTGA CCGCGTTCGC AAAAACGTTC TTCGCGAAAC ACACCCTTCT GAACATCCTC
ACCCGGTACT GCGTCCTCAC AGCCGACCGA CTCCTGCTAG TGATGCGGCC GTATCAGATC
GTTGCAACAG AGCGGATCCT GCAGCGCATC GACGTGTCAA TCACACCAGG TAATAACAAG
CCGCTCGGTA CCACCGCAGC CGGTGGTTAT GTGTGGCACA CAACCGGGTC AGGTAAAACC
CTGACGTCAT TCAAAACCGC GCAACTCGCA TCGAAAATGC CAAGCGTGAA CAAGGTGCTG
TTCGTGGTCG ACCGCAAAGA CCTCGACTAC CAAACCATGC GCGAATACGA CCGCTTCGAA
AAAGGCTCCG CAAACTCCAA CACCTCGACC GCGGTCCTGA AGAAGCAGCT CGAAGACCCG
AACGCACGGA TCATTATCAC CACAATCCAG AAACTCGCGA ACTTCATTGC CGCCAACAAA
GGGCACGAGA TTTACAGTGG GCACATTGTC CTGATCTTCG ATGAATGTCA CCGCTCACAG
TTCGGTGACA TGCACACTGC GATCACAAAA GCGTTCAAAC GCTACAACCT ATTCGGTTTC
ACCGGCACAC CAATCTTCGC CGTCAACGCA GGCTCTGGTG GCAACCCGCA CCTAAAAACC
ACTGAACAAG CGTTCGGTGA CAAGCTCCAC ACCTATACAA TCGTGGACGC CATCACCGAC
AAAAACGTGC TGCCATTCCG CATCGACTAC GTCAACACCA TCAAAGTTGG CAATGTCACC
GACGCCCAAG TGTCCGCGAT CGACACCGAA CGTGCGCTGC TCGCCCCCGA ACGTATCAGC
GAAATCGTCA AATACACGCT GGAACACTTC AACCAGAAAA CCAAACGCAC CTCAAGCTAC
GAGCATTCTG TGGTAACAAA CGTTGCCGCA TCCACACGCG CACAACGCCA AGCAGAAGCA
GTTCGGGAAC GTCGGCGAGT ACGAGGCTTT AACGCGATCT TCGCAGTCGC ATCCATCGAC
GCAGCACGCC GATACTACAA CCACTTCCAA GTGCAACAAG ACGAGTTACC TGCAAGCCAG
AGGCTAAAGA TCGGTTTGAT CTATTCCTAC GGGGCTAACG AAGCGGCAGA CGACAGCATC
ATCGATGATG AAGCATTCGA CACGGACTCG CTGGGAGTCG ACGCCAGGAA CTTCCTGGAA
CACGCCATCC AGGACTACAA CGACACGTTC GGCACCAGTT ATGACACCAG TGCCGACAAA
TTCCAAAACT ACTACAAAGA TCTCTCTCAG CGGCTCAAAA ACCGTGAGCT CGACCTCGTC
ATCGTGGTCA ACATGTTCCT CACCGGATTC GACGCCACCA CCCTCAACAC CCTGTTCGTC
GACAAAAACC TCCGTGCCCA CGGGCTAATC CAGGCATACT CCCGCACCAA CCGCATCCTC
AACTCGGTGA AAACCTACGG CAATATCGTG GCCTTCCGTG ACCTTGAGGA AGAAACCAAC
AAAGCACTTG AACTTTTCGG CAACAAGGAT GCGCGCGGCA TTGTCCTCCT CAAACCATAC
GGGGACTACT ACACCGACTA CGCGGAAAAA GTCACAGAAC TCCTCGACCG GTTCCCATTA
GGTCAACAAA TCATTGGAGA GGAAGCCCAG AAGGACTTCA TTGCCCTGTT CGGTGCGATC
TTGCGCCTCA CCAACATTCT GACCTCATTC GACGACTTCT CCGGCAATGA GATCCTCACC
GAACGGCAAT CACAAAACTT CCGAAGCGTC TACCTCGACC TCCACGCCGA GTTCCGGAAA
AACAACGACT CTGACAAAGA AACCATCAAC GATGATGTTG TCTTCGAAAT CGAACTGATC
AAACAAGTCG AGATCAATGT TGACTACATC CTCATGCTCG TCGAAAAATA CCGCACAACC
CACGGTGACG GCGACGACAA AGAATTACGC ACCGAAATCT CACGCGCCGT TGACGCCAGC
CCATCACTAC GCAACAAACG AGACCTCATC GAAGAATTCG TGGACCGAGT CACAGTTGAC
GGAGCAATCG ATGACGAGTG GCAAGCATTC ATTACTGCAC GCCGTGAGGC CGAGCTTGAG
GCGATCATCA CCGAAGAGAA CCTTCGCGGC GACCACACAC GAAAATTCAT CGACACCGCG
TTCCGCGACG GCACAATCCG CACCAGCGGC ACCGCGATCA CCAAAGTTCT CCCGCCCGTC
TCACGCTTCA GCGCAGCCGG CGGACACAGG GAAAAGAAGC AACGCGTCAT CGAGAAGCTC
GGCGCGTACT TTGAGCGGTT CTTCGGGCTT GGGAAGGCAG AGTAA
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| Protein sequence | MIDAVARKYD PIAVSAESTV VAEYIPDAAS QAAYQSESAL EQELIRLLES QAYEYLPVTS
EEQLVANLRS QLEGLNGITF TDSEWERFFT TSVAGKNDGI VEKTVRIQED HVQILKRDDG
STKNITLLDK KNIHNNRLQV INQYEIGSGE GGANYANRYD VTVLVNGLPM VHIELKRRGV
DIREAFNQIN RYQRDSFWAG SGLFEYVQLF VISNGTLTKY YSNTTRSSHL KEAAKPGKGR
KTSNSFEFTS WWADAQNKPI TDLTAFAKTF FAKHTLLNIL TRYCVLTADR LLLVMRPYQI
VATERILQRI DVSITPGNNK PLGTTAAGGY VWHTTGSGKT LTSFKTAQLA SKMPSVNKVL
FVVDRKDLDY QTMREYDRFE KGSANSNTST AVLKKQLEDP NARIIITTIQ KLANFIAANK
GHEIYSGHIV LIFDECHRSQ FGDMHTAITK AFKRYNLFGF TGTPIFAVNA GSGGNPHLKT
TEQAFGDKLH TYTIVDAITD KNVLPFRIDY VNTIKVGNVT DAQVSAIDTE RALLAPERIS
EIVKYTLEHF NQKTKRTSSY EHSVVTNVAA STRAQRQAEA VRERRRVRGF NAIFAVASID
AARRYYNHFQ VQQDELPASQ RLKIGLIYSY GANEAADDSI IDDEAFDTDS LGVDARNFLE
HAIQDYNDTF GTSYDTSADK FQNYYKDLSQ RLKNRELDLV IVVNMFLTGF DATTLNTLFV
DKNLRAHGLI QAYSRTNRIL NSVKTYGNIV AFRDLEEETN KALELFGNKD ARGIVLLKPY
GDYYTDYAEK VTELLDRFPL GQQIIGEEAQ KDFIALFGAI LRLTNILTSF DDFSGNEILT
ERQSQNFRSV YLDLHAEFRK NNDSDKETIN DDVVFEIELI KQVEINVDYI LMLVEKYRTT
HGDGDDKELR TEISRAVDAS PSLRNKRDLI EEFVDRVTVD GAIDDEWQAF ITARREAELE
AIITEENLRG DHTRKFIDTA FRDGTIRTSG TAITKVLPPV SRFSAAGGHR EKKQRVIEKL
GAYFERFFGL GKAE
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