| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1425 |
|---|
| Symbol | |
|---|
| ID | 8380598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1532657 |
|---|
| End bp | 1534828 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645004175 |
|---|
| Product | DNA topoisomerase IV subunit B |
|---|
| Protein accession | YP_003161380 |
|---|
| Protein GI | 256832653 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGCCT GTCAGTCAAC ACCGCTAAGA TGTCCACTTG TGAGTTCCCA AATCCCAACG
TCTGACTACA CCGCACGCCA CCTCTCAGTC CTTGAAGGGC TCGAAGCGGT TCGGAAACGA
CCCGGCATGT ACATCGGTTC TACCGACTCG CGCGGAATCA TGCACTGTTT ATGGGAGATC
ATTGACAACT CCGTTGATGA AGCTCTGGGG GGCCACTGCA CCGACATTAC GGTGACACTA
CACGCTGATA CCTCGGTGAC AGTGGAGGAT AACGGTCGCG GTATTCCGGT CGATATTGAA
CCCAAAACGG GCCTGAGCGG AGTCGAGGTG GTGTATACCA AACTCCATGC AGGCGGGAAA
TTTGGTGGCG GATCCTACAC AGCCTCCGGT GGGTTACATG GGGTGGGTGC GTCAGTGGTG
AACGCATTGT CTGCGCGTCT CGATGTGGAG GTTACTCGCG CATCGAAGGT CCATGTGATG
ACTTTTCGAC GGGGAGAACC AGGCATCTTT CATGATACTG ACGTGGATCG CCCATCCCCG
GAGTCACGCT TTGATGCGTT TGTGAACAGG TCAGAGCTCC GTGTGGCCCG TAAAGCAAAG
CGCGGTCTTA CTGGAACCAA GGTTCGCTAC TGGGCTGACC GACAGATCTT CCCAACCTCT
GCCGTGTTCA ACTACGACGA ACTTGTTGCA CGGGCTCGAC AAACATCCTT CCTTGTTCCG
GGGTTAACCA TCACTATTCG TGATGAGCGT GCAGTGCCGG GAACTCCAGG GGAACACGGT
CCTTATGAAG AGTCATTTGT CCATGATGGT GGCGCAGTGG ACTTTGTTGA GTTCCTTGCC
CCTGATGTTC CGTTAACAGG AACCTGGCGT TTTCAAGGAA CAGGAAGCTT CAAAGAAACC
GTTCCCGTAC TTGACAACAA CGGACACCTC GTTTCGCAAG AAGTAGAACG GGACTGTGTC
GTGGACATCG CACTGCGGTG GGGAAACGGG TACGACACCA CCGTTCGCAG TTTTGTCAAC
ATCATCGCGA CCCCCAAAGG TGGTACCCAC CTTGTGGGGT TCGAGCAGGG CCTGGTCAAG
TATTTGCGTA AAGCGGTGGA AACCAACGCG CGCAAACTGA AAGTCAGCAC CAAAGACAAC
CAAGAGCGCA TCGATAAAGA GGACATCCTT GCCGGCTTGA CTGCAGTGTT GACTGTGCGA
CTAGCTGAGC CGCAGTTTGA AGGACAAACC AAGGAGGTTC TCGGGACAGC GCCGGTAAGA
GCTATCGTGT CCAAGGTTGT TGAAGACAAC TTGAAAGCGC TGTTTACCTC AACGAAGCGG
GATGACAAAG CACACACGTC ACTGCTCCTG GAAAAGATCG TTGCGGAGAT GCGTGCGCGT
GTGTCAGCGC GCAAACAAAA GGAGATTTCA CGGCGAAAGA ACGCCTTGGA GTCTTCCACT
CTGCCAGCAA AACTGGCAGA CTGCCGCACC CATGATGTGA CAAGGTCAGA ATTGTTTATT
GTGGAAGGGG ACTCCGCGTT AGGAACAGCG AAACTTGCGC GTTCATCAGA GTTTCAAGCT
CTGCTCCCCA TCCGTGGCAA GATCCTTAAC GTTCAAAAAG CCTCGATTTC TGACATGCTC
CGTAACGCAG AATGCGCATC AATTATTCAA GTGATCGGTG CGGGTTCTGG TCGCAGTTTT
GACCTTGAGG CAGCCCGCTA CGGAAAAGTC ATCTTGATGA CCGACGCAGA TGTTGATGGT
GCACACATTC GCACACTGCT CCTCACTCTC TTTTTCCGAT ACATGCGTCC CCTCATTGCT
GAGGGGCGTG TCTTTGCCGC AGTCCCACCT TTGCACCGGA TCGAAGTGGT GGGTTCAGGG
CGCAGGAAGA ACTCCTACAT CTACACCTAC TCGGAAGCTG AGTTGACGGC AACGCTGGCA
AAATTGCGCA AGCAAGGGCG TGCATTCAAA GAAGACATCC AACGGTACAA AGGATTAGGA
GAGATGGACG CGGATCAGCT CGCAGAAACG ACCATGGACC CTGCACACCG GACACTGAGA
CGCGTTACCG TTGACCACGC TCACGCTGCT GAAGAAGCTT TTGAACTGCT CATGGGTCAG
CATGTCGCCC CACGCAAAGA GTTCATCATT CAAGGAGCAA GCCAACTCGA CCGAGCGCAA
ATTGACGCGT GA
|
|---|
| Protein sequence | MWACQSTPLR CPLVSSQIPT SDYTARHLSV LEGLEAVRKR PGMYIGSTDS RGIMHCLWEI
IDNSVDEALG GHCTDITVTL HADTSVTVED NGRGIPVDIE PKTGLSGVEV VYTKLHAGGK
FGGGSYTASG GLHGVGASVV NALSARLDVE VTRASKVHVM TFRRGEPGIF HDTDVDRPSP
ESRFDAFVNR SELRVARKAK RGLTGTKVRY WADRQIFPTS AVFNYDELVA RARQTSFLVP
GLTITIRDER AVPGTPGEHG PYEESFVHDG GAVDFVEFLA PDVPLTGTWR FQGTGSFKET
VPVLDNNGHL VSQEVERDCV VDIALRWGNG YDTTVRSFVN IIATPKGGTH LVGFEQGLVK
YLRKAVETNA RKLKVSTKDN QERIDKEDIL AGLTAVLTVR LAEPQFEGQT KEVLGTAPVR
AIVSKVVEDN LKALFTSTKR DDKAHTSLLL EKIVAEMRAR VSARKQKEIS RRKNALESST
LPAKLADCRT HDVTRSELFI VEGDSALGTA KLARSSEFQA LLPIRGKILN VQKASISDML
RNAECASIIQ VIGAGSGRSF DLEAARYGKV ILMTDADVDG AHIRTLLLTL FFRYMRPLIA
EGRVFAAVPP LHRIEVVGSG RRKNSYIYTY SEAELTATLA KLRKQGRAFK EDIQRYKGLG
EMDADQLAET TMDPAHRTLR RVTVDHAHAA EEAFELLMGQ HVAPRKEFII QGASQLDRAQ
IDA
|
|---|
| |