| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1209 |
|---|
| Symbol | |
|---|
| ID | 8380386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1287339 |
|---|
| End bp | 1289093 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645003956 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003161168 |
|---|
| Protein GI | 256832441 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGCG GAATTAGCGC AGAACCGCGC ATTTATGCTC GTGCGATTAC TGCGTCAGCG
CTGTTCGGCT TACTTACTGT GGCAATTTCC CGGGTCATCG GGTGGATCAC CAACACCTAT
GTCATGCCGA TCATTGAGTC AGACACCCCG GTCGTCCAGG TGTGGCAAGG AGCCGCGGTT
CTCACCGTAG TCATTGTTGC CTTAACCTTG TCCATTGCCG CGCGACGTAT ATTTGCGGCT
CAGGGAACCT ACGCCCTCCA GGCGCGTCAC CGTGTTCACC TTGCTGATCG TCTTGTTGAT
CTTCCTCCGG CGTGGCACCG CGCGACGTCA CCGGGGAAGA TCTTGTCTCA TGCGTCCTCT
GACGCTGAGG CGGCAACAAG CGTGTTCAAC CCATTACCGT TCGCCTTAGG TGTTGTGGTC
ATGTTGCTGA CCTCCACGGT CATGCTGGTG CTCATTGACC CCGCTATAGC CTTGGCTGCG
TTGGCGATCA TCCCGGTCAT GATGATTGCG AACATCCTGT TTCAACGCAA AATGTCACCG
GCCGTCACCA CCGCGCAACA ATTGCGCGCT GATGTGTCAG AAACGGCGCA CGAGAGTTTT
GAGGCAGCAA CACTGGTCAA GGCGATGGGG ACTGCTCAGG TTGAGTCGGC GCGTTTCCGT
GAAGACACAA CGCGACTGTT GACGGCGAAC ACCCGGGTCG GGGCGTTGCG TGCAGTATTT
GATCCGATTA TCGATGCGCT GCCACATCTT GGTTCATTGC TCGTGCTTCT TGTTGGTGTC
CAGCGTCTTG CCACTCAGGA CATCACGGCA GGTGATGTGG TCACCGCGAC GTATCTCATG
TCGTTGCTGT CGGTACCTGT GCGATCGTTT GGCTGGGTGC TCGCGGAGTT ACCCCGCTCG
GTAGTGGGAT ATCAGCGTGT AGCTGAGGTA GTTGACACTC CCAATCCCAT GCCCCCAGGT
CACGTTAGCC CTGACTGGGA TGCGCACGAG CCACTGGAGG TATCGGTTCG TGACGTGTCT
GTTGTATACC GGGAGGAACA AGGCGAGCAG AGGGTGTTGG ATGAGGTGAG TCTGACGATT
CCAGCCGGCT CGCTGACAGT TCTTATGGGG CGCACCGGAG CTGGCAAGAC CACACTGGTG
TCACTGTGCG CGCGGCTTGC AGACCCCAGT GAGGGTGAGG TCCGGTTGGG GGGCTTTCCG
GTGGCAGAAC TAACCCATGA TGCCATCACG CGACATGTCG CGTTCGTCTC TCAATCACCG
TTTATTTTTG ATGACACAGT CCGTCACAAC GTGACGTTGA ATAACGAGAT GTACTCCGAT
GATCAGGTGT GGCAGGCGCT CGAAGATGCG CACATTGCAG ATCATGTTCG GTCAATGCCT
CGACAGTTGG ACACTCATCT TGGTGAACGC GGTTCATCTC TATCTGGCGG GCAGCGCCAA
CGGATCGCGC TTGCCCGAGC CCTGATTACT CAGCCCAGCG TGCTCATTCT TGATGACGCG
ACCTCTGCGC TTGACCCCCA GGTTGAGCAG GCAATCCTCC GCACAGTCAA AGCGAAATCC
CGCGCAACTG TGGTGATGGT GGCCTACCGG TCTGCGTCTG CTCAACTTGC CGACCATCTC
GCGGTCTTGT CCCAGGGGCG GATAGTGGCT CAAGGGGACC ACAAGCACCT GATGGAATCC
TCCGAGGACT ACCGGGATCT TGTCATGGCG TATGACAATG ACGCAGAGCG CAGACAACAG
GAGGGGACAG AATGA
|
|---|
| Protein sequence | MVRGISAEPR IYARAITASA LFGLLTVAIS RVIGWITNTY VMPIIESDTP VVQVWQGAAV
LTVVIVALTL SIAARRIFAA QGTYALQARH RVHLADRLVD LPPAWHRATS PGKILSHASS
DAEAATSVFN PLPFALGVVV MLLTSTVMLV LIDPAIALAA LAIIPVMMIA NILFQRKMSP
AVTTAQQLRA DVSETAHESF EAATLVKAMG TAQVESARFR EDTTRLLTAN TRVGALRAVF
DPIIDALPHL GSLLVLLVGV QRLATQDITA GDVVTATYLM SLLSVPVRSF GWVLAELPRS
VVGYQRVAEV VDTPNPMPPG HVSPDWDAHE PLEVSVRDVS VVYREEQGEQ RVLDEVSLTI
PAGSLTVLMG RTGAGKTTLV SLCARLADPS EGEVRLGGFP VAELTHDAIT RHVAFVSQSP
FIFDDTVRHN VTLNNEMYSD DQVWQALEDA HIADHVRSMP RQLDTHLGER GSSLSGGQRQ
RIALARALIT QPSVLILDDA TSALDPQVEQ AILRTVKAKS RATVVMVAYR SASAQLADHL
AVLSQGRIVA QGDHKHLMES SEDYRDLVMA YDNDAERRQQ EGTE
|
|---|
| |