| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0465 |
|---|
| Symbol | |
|---|
| ID | 8379650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 496401 |
|---|
| End bp | 497633 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645003197 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_003160432 |
|---|
| Protein GI | 256831705 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTTG TTCATTCCGC CGCCGGCCAA CATACATTGC GTGAAAGGAA CCTTGCGCTC
GTTGCGCAAG AGATCTTTGG CTCCAAAGAT CCCCTCTCAC GTGCTGCCCT CGCAGTACGC
ACTGGCCTCA CCCGAGCAAC CGTGTCCTCC CTCGTTGACC TGCTCGTCGA CGCACACATT
GTGGCCGAAC TTGACCCTGT CTTCTCCCGG AAAGCCGGCC GCCCAGCGGT CCCACTCACC
CCAGCACGAG GGACATACTT TGGGATCGGC CTCGAAGTGA ACGTGTCCTA CCTTGGTGGG
GTTATCCATG ATTTGACCGG CACTGCCTAC CACCGCATCC TCCTCCCGGG TGATTTTCAC
GGATCCGACC CAGCAACCGT GCTCGAAAAA CTCGCTGCAG TCACCACCGA GCTCATCACC
ACCGCCACCG CATCAGAACT CCGCCCCACC CATTCCACAC CGATCATCAC CGGCGCGCAT
CTTGCCCTAC CCGGCCTCGT TGACCCCAAC AACGCCACAC TCCGCATCGC CCCCAACCTC
GGCTGGGCTG ACCTCGACCC CGTCGACACC ACCCCCATCA GTGCGGCCGT CACCGCCGCC
ACCGGGCAAC ACACCAACGT GCGCATCGGC AACGAAGCAA ACTACGGTGC GCTCGCCGCC
AAAGAACAAG CCAACCTCAA CACCTTCATC TACGTCTCCG GTGAGGTGGG CATCGGGTCA
GCAATCATCC TCGACCACAC CCTCTTCCTG GGCCGACGCG GCTGGTCCGG AGAACTCGGC
CACGTCACCA TTGACCCCAC CGGCCCACAA TGTTCCTGCG GCTCGCGCGG CTGCCTCGAA
CAATACGCCG GCCTCGACGC CATGCTCACA GCAGCACAAC TCGATACCTC AGCTGGCATC
ACCGGTCTCG TCACTGCCCT CGAACAAGGA AACCCCCACG CACATGACGC AGTCCAACGA
GCCGCCACCG CACTAGGACG AGCCCTGTCG GGATACGCAA ACTTACTAGA CATTCACATG
TTCGTCCTGG GAGGCATCTA CGCTGACCTG TACCCTCATA TAGTCACAAC GGTCACTGAG
TCGTTGCGCC ACCAGGTCCT GTCTGCACCA TGGGCAGACT TCGACATCCT TCCCGGCACC
CTCGGATCAG GAGCAGCCAT GCTCGGGGCA GCCTACGAAG CTGTGCGCAC GGTTTATACC
CACCCTTCCC CTTGGATTTC ACCTGATGCA TAA
|
|---|
| Protein sequence | MTVVHSAAGQ HTLRERNLAL VAQEIFGSKD PLSRAALAVR TGLTRATVSS LVDLLVDAHI
VAELDPVFSR KAGRPAVPLT PARGTYFGIG LEVNVSYLGG VIHDLTGTAY HRILLPGDFH
GSDPATVLEK LAAVTTELIT TATASELRPT HSTPIITGAH LALPGLVDPN NATLRIAPNL
GWADLDPVDT TPISAAVTAA TGQHTNVRIG NEANYGALAA KEQANLNTFI YVSGEVGIGS
AIILDHTLFL GRRGWSGELG HVTIDPTGPQ CSCGSRGCLE QYAGLDAMLT AAQLDTSAGI
TGLVTALEQG NPHAHDAVQR AATALGRALS GYANLLDIHM FVLGGIYADL YPHIVTTVTE
SLRHQVLSAP WADFDILPGT LGSGAAMLGA AYEAVRTVYT HPSPWISPDA
|
|---|
| |