| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0459 |
|---|
| Symbol | |
|---|
| ID | 8379645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 482704 |
|---|
| End bp | 488835 |
|---|
| Gene Length | 6132 bp |
|---|
| Protein Length | 2043 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645003192 |
|---|
| Product | Fibronectin type III domain protein |
|---|
| Protein accession | YP_003160427 |
|---|
| Protein GI | 256831700 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAATGGT GGCCACAACG CACCAGTAGG TCCCAGCGTT CTGAGCCTCT TTCCGCAACC
CGGTTGTCTT CAGTGACCGT AGGTGTTGCT GTTCCAGCTG TCCTTGCCAC CCTTGCCATT
ATTAACCCTG GCTACGATAT CTCCGATGTT GACCTCAACG ACGGTTCTGT GTGGATCACG
AACACCACCG AGCTGAAAGC AGGCCGCTAC CACGCGAAGG TCAAAGAAAT TAACGGTGGT
GTCGTCCCCA CCGACCAAAC GTTTGACGTG TTGCAAGATG GACAGGACGT GCTCATTGCA
CAAGGTGCAT CATTGTCACG TGTTGACCCT GCAAATGTCG CGTTTGATGC GGTTGCGCAG
ATCCCTGCAG GCGCTGCCAC CTCGATGGCG GCCGGTGTCC TGGCAGTCAC TGACGATTCA
GGGTCCGTGT GGGTCCAACG AGTCAGTGAC CTGACAACCA TTGACGATAC AACTCCGCCG
CTTGCTGACT TCGGTGACGG TGCGGTGAGC ACAGTGGACC GCTCCGGAAT TGTCCACGCG
TGGGACCCAG GCACGGGGGC TGTGTCATCG TGGTCGGGGT CAGGTGCAGT CGCATCTGAG
CCAGTCACCT TAAAAGATGC TGTCGGTTTG CCCGTCGGCG CGCGTGACCA ATCACGGACA
CCACAACTCA CCGCAGTGGG GTCAACCCCC GTTCTCGCGG TGGGAACCAC CGTGTACACA
CCGCGCCAGT CAGTGAACCT CCAAGAATAT GGGAGTACGG TTGCGCTTGC TGCCCCAGCA
ACGCACGGCG AGGCAGTGGT GGTTGCCACT GATCGTGCAC TGCTGTCGGT GTCCCTCAAC
TCTGGTGATG TCACAGTTGT TTCTGAAGGG ATGCAGGGGG AGCCTGCTAT CCCGGTTGTG
GTGGGTGCCT GCACGTATGG TGCGTGGGCG GCCTCAGCGA ACAACTATGT CAACACCTGT
GATGGGAATA CTGTTCAAAG TATTGAGGGC ATGAGTCAAG GTTCTCAGGT GGTGTTCCGG
GTGAACCGGC GTGTTGTTGT GTTGAACGAT GTTGTCCAGG GGCGGGTGTG GCTCCCCGAG
GAACTTCCGC AACCTGAGGA GCCAAACTGG AGTGAGGTGC AGTCCCCGGA TTCACTGGAG
AACGAGAACC CGGACGACGA TGACTCGGAT CTAGTTCAGG CAAACACCGC AGAATGCCAG
ACAGATGACC GGGCTCCGAA AGCCAACGAT GACGAGTATG GGGTCCGTGC GGGGCGAACC
ACGGTCCTGA ACATTTTGGG TAATGACACG GTGGGGCAGT GCGGGATTAT CGCCGTGTCA
GAGACGGGTG CTCTGCCTGA TGCGTTTGGG ACGGTTCGGC AGATCCATTC GGGTCGTTCG
TTGCAGGTGA CAGTTGCGGA GAATGCGTCG GGAACGCAGG AGTTCACCTA CACGATTTCT
GATGGACGAG GAACCAACCC ACCGTCCACA GCGACTGTGT CGTTGACAGT GCGTGACACC
GGGGTCAATA GCGCGCCGGA ACAGATCCAT GAGTCACGCA TGGAAGTTGA GCAAGGCGCG
CAGGCCCAAT ACAACGTTCT CGCTGATTTC CTTGACCCTG ATGGTGACCA ACTGGTGCTG
GAAGCCGCAA CCATTGAGGG TGAGCAAGGG GCCGTCCGGT TCAGCCAAGA CGGCATCATG
ACGTACATTG CGGATGTTGA TTCCCAAGGT GTGCAGACTG TCAGTGTTGT GGTCTCGGAT
GGTGTGGAGC GAACAACCGG CATCGTTGCC GTGGAGGTGT CCCCACTGGG CACGTTACCC
CCGACCGTGG ACCCCATTCA CGAGGTTACC TATGTGTCTT CACCCGTCGA GGTGAATGTA
CTCGCAGCGC TCAATAGCCG TTCTGCAGAG CCCTCTCGTC TTGCTGGGGT GGAAGAAGTG
GCGGGGACAA CGCTCACCAC TGACCTCGAC GCAGGGACAT TCACGTTTTC TGCCCCAACG
CCAGGAACGT ATTATGTCCG GGCGAACGTT GTGTCCTCAC CGCATAGCAT CACCGCATTA
GCGCGTATCG ATGTGCGTGA ATGGCCTGGT GAACCACAAC CGCCAGTGGC AGTCTCAGAT
GTTGCGCTCC TTCCTGCTGG TGGCCAAGTC ACTGTCGCGC CACTTGCCAA CGATATTGAC
CCCAACGGTG GTGTACTGGT CATCACCGGT GTCACCACCT CTGATGCGTC GACCTTGTCA
GTTGGTGTGA CCGAACACCG GTATGTGACG ATCAAATCGC GGGTTGCCCT GACAGAACCT
GAAGTGGTGA CCTACGAGAT TGATAACGGG TATGCCCGAG TGACCGGTGA GATCTTGGTG
CAGCCCACTG AGCCATCCAC GCAGCAGCGT GCACCAGAAG TCACTCCCAT CACCGTGACC
GTACGCACCG GTGGTGTTGT CACGATCCCT GTTCTTGACA GCGCCAGTGA CGCCGACGGT
GACACGATCT CCGTGGTGCA AGACCTCCCG GAACCCTTAA GCGAAGCGGA AGGGCTGATG
TTCGTGTCTG GGAACGTCAT CCGGTACCAG GCCCCCGACG AACCACGGAC AACGCGGACC
ACATTTACTG TGCGCGATGA ACACGGCAAC CTTGGGTCCG GTGAACTGAC CATTCTTGTT
CATGAGTCCA ACCCGGAGGC CAAAGCACCT CCGAAGCCAC GCAACATCAC AGCGCGCGCG
TATGCGGGCG AAACGATCCG TATCCCTATT CCGCTGACCG GCATTGATGT GGACGGCGAC
GGCGTCACAC TTCTTGGACT AGGAGACCAA GCACCCACTC AAGGGTTTAT TAGTGCTCAA
GGAGCGACCT GGCTCGAGTA CACGGCATCA CGCACAGCCC GAGGAACCGA TGTGTTCACG
TACGCGGTCG AAGACTGGAC GGGACAACGG GTTCTTGCCA CGGTCCGAGT TGGGTTGGTC
GAAAAACCAG AAGGCGCACT CCCGATTGTT GCCACCGATG ATGAAGTCAC CGTCGAACCT
GGCGCCAACG TGGAAGTGCG TGTGCTCCGT AACGACATTG ACCCCTCCGG ACTGGACCTC
ACTATCCAAC CTTTGCCGGA CGTAGAAGGG CTGATCGCGA CGGTCAGTGG CCGCCGGATC
GCTGTTGAAG TACCCCAAGA CGCTGAGACC AAAACGTATG CCATCCCCTA CCAGGTCACC
AACCCGGTCG GGGGAACCGC AAATGCGGTT CTGCGTGTTC ATGTAAGCGA AGATGCAGGA
ATCGCAGCGC CCCTTGCTGA AGACATCACG GTTGCTCCCA CCGAGGTGAT CGATAAGTCC
ACGGTGGAAG TCGATGTCAT GGAAGTGGCC GAAAACCCGT CCGGACCACT CAGCGACCTG
CGCTTGTCCA TCCCACCGAG CCACAGTGAC GTGGCCCAGG TCGTGGGTAG TGACCGGGTC
CTTGTCACGC TGACTGACAC CGCACAAACC ATTCCTTACC GCCTGGAGAA CCGCCACGAC
TCCGGTGCCT ACACCTACGC GTTCATCACG GTGCCGGCCC TGGGTGACTT CCCGCCCACA
GTGCGTCCTC GTGTCCGCGA ACTCCGGGTC GCATCAGGCG CAGAACTGAC CATCCCCCTT
GCTGAGTTTG TTCAGGTGGG AACAGGCAAA ACCGCACAAA TACTCGACAC CTCCACAGTC
AGTGCTACCC AAAGTGACGG TTCTGCCCTC ACCGTTGACG CCACCACCCT CCGGTTTGTG
TCCCGCCCAG GATTCGCAGG CACAGCTTCC ATCACGTTTG AGGTGTGGGA TTCTGCCACC
CAATCTGACA GTGGGCGTTC GGCCGTTCTG ACGCTTCCCA TCACTGTGTT TGCCGAAGAA
GACCTTCCTC CCACGTTCTC ACCCACACTG GTGCGTGTCC CGCAAGGCTC AGCCCCCATC
ACCGTCGACC TGAACCTCTT CACCACTCCC GCCGATGGGG CAACGAACAC TGAGTTTGGG
TACCGGGTCG CGAGCCCTGC CACGTCAGGA TTCCTTGCGA GCATTGACGG ATCAACCCTC
AGTGTGTCTG CGCCCCCTGA ACTATCCCGA GGAACTCAAG GGTCACTTGC CCTGACGATC
AATTACGGGC TCGCTGGCTC CATTCAGCAA ACCATCCCCT TCGAGGTTGT AGCCTCCACC
GAGCCACCAC CCTCAGTCAG CGACCGCGAT GTCATCGCGA ACGCAGGTGA AAGCCAAACA
GTGGACCTCC TCGCAGGTGC CTACGACCCG GTGGGTCTTG GCCTACGAAT CACCAGTGTC
CGTGTTCTCA CCTCGGGCAC CGGAACCACG GCCACCGTGC AGGGAAATAA AGTTGCCGTC
ACCCCCGGGG CTGACTTCGC AGGAACTGTC AGGGTTGCCG CAACCGTCGC GGACGGTCTT
AACGACCCCA ACCGTGTCAC GGAAGCGACC ATCAATCTCA CCGTACGTAA AGTTCCTGAC
GCACCACGCA CACCACGAGT GTCTAACCCC TCCAACAGGG CTGTCACCGT TGCGTGGGAC
GCACCGAACG CCAACGGCGC ACCCATCACC GGGTACCGGG TCACAGCGCA ACCAGGGGGA
GCAACCCAAA CATGCGCATC GACAAGCTGC ACCTTTGAAG GTCTGACCAA CGGAACCGAA
TACCGGTTCA CCGTGGCGGC CCTCAACGAC GTAGGGTACT CCGACGAATC ACCGACCTCA
GGTGGGATCA CCCCGGATGT CCTTCCTGGC GCTCCAGGTA CCCCACAACT GACTGACGGT
GACGGACAAA TCACCGCCAC GTGGGAGCGG GCATCCAACG ACGGTTCACC CATCCGTTCC
TACACTGTGG AACTCTCCCC AGGGGTCGGT GGCGCAGGTG TCACCGTCAA AGAGGTCTCC
GGAACAAGCA CCACCTTGAC TGGGTTGACC AACGGAACTG CCTACAAGGT ACGGGTTCGG
GCAAATAACT CTGCTCTCAC TGACGGAGGG GCAGGGCCTT GGAGCCCATT GTCCGCATCG
GCAACTCCTG CAGGTCCACC CCCTACCCCA AGCGTGTCCG CACGTCTTGG CGGTGCCCAA
GAAATCAAAG TGTCCTGGCG TCTTGACTCC ACAAACGGTG CCGCCCTGCG CAACTACACG
CTGACGGTCC TCCAAGGAGG AACTGAAGTC AGGACAGTCA CCCTGGACCC AGGGGCCACC
GACTGGTCGT TCACCAACGC CCAAGACGGG GTGGACTACC GGTTCGCGGT GCGCGCCACC
AACCGTGCCG GAACCTCCAA AGCAGGCACT TCCGATGCGA TCTCCACGTT CTCTGCCCCC
TCATCCCCAG GTGCAGGACA AACCGCTGTC GATGAGACAC GCTCCTACGC ACAAGGGGGC
CGTATCACGC TCAACTGGTC TGCGCCGTCA GCCACCGGTG GGGTCGGAAT TGGTATCACT
CATTATGAAT TATCGGGGGT ACCAGGGCAG ATCTCCGGCA CCAGTTACCG ACTTGACGGC
CTCACCCCAG GTCAAGCCAC ACCGTCATAC AAGGTGCGTG CCTGCAATAC ACGCGGAGCA
TGCTCCGAGT GGACTACCCT GCCTGGTGCC ACCCCAGTGA CTGCACCACA ACGTCCCACC
CTTGAGGCGA ACTTCTCCCA CAACTACGAC GAGTTCAACC TCACCCTCAC TGCTGGGGCA
ACTGGTGGAT ACAGCAACGT CACTCACGAA TACCGCATCA ACGGCGGTGA ATGGCGCACC
ATCAGTTCCG GGGACGCCAT CACTGGACTG TCGGTACGGC GCAACGAGGT GGACGGCGTC
ATCACCATCG AAGGGCGTTC GACAAACAAG TCCGGCACCA GCCCTCTGAC GGCCACCACC
CTCACCCTGC GGCAACCCAC CGCACCCACC AGTGTTGAGG TCACAGTGAC GGACGCTGGG
AATATTCCCG TGAGCTGGCA GCCCGCACAG GAACGCGGCT ACCGCATCCA AGAGTATGAA
GCATGCTGGT CGGTGCGTGG CGGAACCTGT AGTGACTGGA AATGGATCGG TGGCAGGCAG
GACACGTCGG GGACCCACTG GCCAGACCTT GAGCTCCCTG ATGCGGGGGG CGAGTTTGAC
CTCCATCTGC GTGCCCGCAC CAGCACTGGG GTCGGCGCAA CAGCAGTAAC ACCGTTTACC
TACGAACCAT AA
|
|---|
| Protein sequence | MKWWPQRTSR SQRSEPLSAT RLSSVTVGVA VPAVLATLAI INPGYDISDV DLNDGSVWIT
NTTELKAGRY HAKVKEINGG VVPTDQTFDV LQDGQDVLIA QGASLSRVDP ANVAFDAVAQ
IPAGAATSMA AGVLAVTDDS GSVWVQRVSD LTTIDDTTPP LADFGDGAVS TVDRSGIVHA
WDPGTGAVSS WSGSGAVASE PVTLKDAVGL PVGARDQSRT PQLTAVGSTP VLAVGTTVYT
PRQSVNLQEY GSTVALAAPA THGEAVVVAT DRALLSVSLN SGDVTVVSEG MQGEPAIPVV
VGACTYGAWA ASANNYVNTC DGNTVQSIEG MSQGSQVVFR VNRRVVVLND VVQGRVWLPE
ELPQPEEPNW SEVQSPDSLE NENPDDDDSD LVQANTAECQ TDDRAPKAND DEYGVRAGRT
TVLNILGNDT VGQCGIIAVS ETGALPDAFG TVRQIHSGRS LQVTVAENAS GTQEFTYTIS
DGRGTNPPST ATVSLTVRDT GVNSAPEQIH ESRMEVEQGA QAQYNVLADF LDPDGDQLVL
EAATIEGEQG AVRFSQDGIM TYIADVDSQG VQTVSVVVSD GVERTTGIVA VEVSPLGTLP
PTVDPIHEVT YVSSPVEVNV LAALNSRSAE PSRLAGVEEV AGTTLTTDLD AGTFTFSAPT
PGTYYVRANV VSSPHSITAL ARIDVREWPG EPQPPVAVSD VALLPAGGQV TVAPLANDID
PNGGVLVITG VTTSDASTLS VGVTEHRYVT IKSRVALTEP EVVTYEIDNG YARVTGEILV
QPTEPSTQQR APEVTPITVT VRTGGVVTIP VLDSASDADG DTISVVQDLP EPLSEAEGLM
FVSGNVIRYQ APDEPRTTRT TFTVRDEHGN LGSGELTILV HESNPEAKAP PKPRNITARA
YAGETIRIPI PLTGIDVDGD GVTLLGLGDQ APTQGFISAQ GATWLEYTAS RTARGTDVFT
YAVEDWTGQR VLATVRVGLV EKPEGALPIV ATDDEVTVEP GANVEVRVLR NDIDPSGLDL
TIQPLPDVEG LIATVSGRRI AVEVPQDAET KTYAIPYQVT NPVGGTANAV LRVHVSEDAG
IAAPLAEDIT VAPTEVIDKS TVEVDVMEVA ENPSGPLSDL RLSIPPSHSD VAQVVGSDRV
LVTLTDTAQT IPYRLENRHD SGAYTYAFIT VPALGDFPPT VRPRVRELRV ASGAELTIPL
AEFVQVGTGK TAQILDTSTV SATQSDGSAL TVDATTLRFV SRPGFAGTAS ITFEVWDSAT
QSDSGRSAVL TLPITVFAEE DLPPTFSPTL VRVPQGSAPI TVDLNLFTTP ADGATNTEFG
YRVASPATSG FLASIDGSTL SVSAPPELSR GTQGSLALTI NYGLAGSIQQ TIPFEVVAST
EPPPSVSDRD VIANAGESQT VDLLAGAYDP VGLGLRITSV RVLTSGTGTT ATVQGNKVAV
TPGADFAGTV RVAATVADGL NDPNRVTEAT INLTVRKVPD APRTPRVSNP SNRAVTVAWD
APNANGAPIT GYRVTAQPGG ATQTCASTSC TFEGLTNGTE YRFTVAALND VGYSDESPTS
GGITPDVLPG APGTPQLTDG DGQITATWER ASNDGSPIRS YTVELSPGVG GAGVTVKEVS
GTSTTLTGLT NGTAYKVRVR ANNSALTDGG AGPWSPLSAS ATPAGPPPTP SVSARLGGAQ
EIKVSWRLDS TNGAALRNYT LTVLQGGTEV RTVTLDPGAT DWSFTNAQDG VDYRFAVRAT
NRAGTSKAGT SDAISTFSAP SSPGAGQTAV DETRSYAQGG RITLNWSAPS ATGGVGIGIT
HYELSGVPGQ ISGTSYRLDG LTPGQATPSY KVRACNTRGA CSEWTTLPGA TPVTAPQRPT
LEANFSHNYD EFNLTLTAGA TGGYSNVTHE YRINGGEWRT ISSGDAITGL SVRRNEVDGV
ITIEGRSTNK SGTSPLTATT LTLRQPTAPT SVEVTVTDAG NIPVSWQPAQ ERGYRIQEYE
ACWSVRGGTC SDWKWIGGRQ DTSGTHWPDL ELPDAGGEFD LHLRARTSTG VGATAVTPFT
YEP
|
|---|
| |