| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0219 |
|---|
| Symbol | |
|---|
| ID | 8379414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 233877 |
|---|
| End bp | 235070 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645002953 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_003160196 |
|---|
| Protein GI | 256831469 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.405148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGTA ATGTTGGTCA TGCCCGCGAT GACATGATCT CCCATCCAAT ACGCAATATG
CTGGCTATTT TTTCTGTTTT CATCGGTGTT TTATCAGTCG TCGCAATTAT TACGGTCGCG
GGGGTGACAA AAGAGGTTTT CCTTGCCGCA TCTGAGCAAC GTTACGGGCG CTTGACCACC
ATGCACACCC AACTCGATGG TCCGCTACCA GTCGTTGAAC AGATAGTTCG TTCTGTCAAA
GCTGCGCGGA TAGCGGCGCC TGGGGCAGCT GTGGTCATCA CAGCTACAAC CTCGGAGTCG
ACCGGTTTTT CACCAACAAC AAATGGGCCG CATTACGCGC CGTTTATTTT TGTCGACACG
ACTTTTGTTG CCGGTGACCT CACCCAGGTG AAGCGGCTGC CGATCCTCCA CGGGCGATGG
ATTTCTCAAG AACACACGAT CCCGGTTGAA ATCGTCATCA ATGAGGCTGC TCAAGGACTT
TTAGGTGTCG TGGGAGGCAC CCCCGTCCTG TCATTTGGGT CAGGATCACC GCCAGTCGCC
ACGCTCACGG TTGGTGTCGT TGCTGACGGT GAAAGCACAC CGAAGATTTA CGTTTCGCTT
CCTGCCGTGT TGACGATTCG GGAACAGATT TCCCCAAGTT TGAGCGCATC TCTTGTTGTT
CACCACCCGA CTGCGACTCG CACAATGTTT GAAGAACTCA CAACGCGCAC AGTAGGTCTC
CTGGGAATGA CGCATGACCC TCAAGGGCTT AACCGACTCG ATCAGGTTGA TGACCTTCTC
CTGCAATTGA AAAGCCAGCA ACAAGGGTTC CTTATCGCAG CTGTTGTTGC GCTTTTCGTG
TCAGGTCTTG GCATTCTCAA CATTGGTTTA TCTTCTGTGC GGGAGAGGTC CCACGAGTTT
GTCGTGCGGC GGGCGCTCGG TGCCCGCCGC AGTGACCTCA CGTGGCAAGT TCTCCTGCAT
TCGCTGGGTA TCGGGGTCAT CGCATCGGCG CTTGCGGTAA CAACTGTCAT CGTTGGCGTT
CACCTGTGGG TGCCGAACCT TATTGCTCAG AACTCTGCGA TCATTCCGCC AGGTGTGCCG
TGGGAGGCTG TGCTGTGGGG GCTGGTTGCC GCAAGTGCAA CGACCCTCCT CGGAGCTCTC
GCACCTGCCG TTGTCGCTTC TCGCCTCAAT ATGGCAGATG CGCTTCGGGC GTAG
|
|---|
| Protein sequence | MIRNVGHARD DMISHPIRNM LAIFSVFIGV LSVVAIITVA GVTKEVFLAA SEQRYGRLTT
MHTQLDGPLP VVEQIVRSVK AARIAAPGAA VVITATTSES TGFSPTTNGP HYAPFIFVDT
TFVAGDLTQV KRLPILHGRW ISQEHTIPVE IVINEAAQGL LGVVGGTPVL SFGSGSPPVA
TLTVGVVADG ESTPKIYVSL PAVLTIREQI SPSLSASLVV HHPTATRTMF EELTTRTVGL
LGMTHDPQGL NRLDQVDDLL LQLKSQQQGF LIAAVVALFV SGLGILNIGL SSVRERSHEF
VVRRALGARR SDLTWQVLLH SLGIGVIASA LAVTTVIVGV HLWVPNLIAQ NSAIIPPGVP
WEAVLWGLVA ASATTLLGAL APAVVASRLN MADALRA
|
|---|
| |