| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4168 |
|---|
| Symbol | |
|---|
| ID | 3936657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 4276418 |
|---|
| End bp | 4278658 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906554 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_512110 |
|---|
| Protein GI | 89056659 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGC TGAAAACGTT CACCCGCCGC GCGTTCCTCG TGGGCTCAGC CGCCGTCGCG
GGCGGCGTGG CGTTCGGGAC CTATCTGGTG GCCCGCGACC CGGACAACCC CAATCTCCAG
GGCTTGGCGG AGGGTGCGGC CTCCTTCAAC CCATGGGTCC GCATTGACGC GACGGGCATC
ACGCTGGTCA CGCCCCACGC CGATATCGGA CAGGGTGCGG CCTCTATGCA GGCCGCTTTG
ATCGCGGAAG AGATGGATCT GGACTGGGCC GACTTCGAGA TCGACTTTGG ACGTCCTGCC
CCGGCCTATT GGAACACGGC GATGGCGGGC GAAAGTGCGC CCGTGCTGCC GTGGGATGAC
AGTTTTGGCG CACAGGCCAT GCGCTCCACC GTCGGGTCCT TGTTGAAGGT AATCGGGATG
CAAGGGACCG GCGGCTCCAC CTCCACGCCC GACAGCTACG TGAAGCTGCG CGAAGCCGGG
GCCATGGCGC GGGAAACGCT GAAGCTGGCG GCATCGCAGC GCACGGGTAT TTCTTTTACT
GAGATGCGGA CAGAGGGGGC GGCCGTCCAT CTGCCCGACG GCACGGCAAT TCCTTACGTG
GACCTGGCGA CTGAGGCCGC GGGGTTGGAG CCTGTCCAAG GCACGCCGCT CCGCGATCCG
TCCACGTGGC GGTTGGTGGG CAAGGATATG CCACGCATTG ACATTGTCCC GAAATCGACC
GGCGCGCCGA TCTACGGGCT CGACATTGAG CTGCCCGATA TGGCCCGCGC AAGCCTGCGA
ATGAACCCGC GCAAAGGTGG CGCGCTGAAC GGGTTTGACG CCTCCACCGC CGAAGCGATG
CAGGGCGTTG AGCGCGTTCT GGGGATCCCC GGCGGTGTTG CCGTGATCGC GACCAATACC
TGGTACGCGA TGCAAGCCCT CGACGCGATT GACTACGATT GGGGTCCTGC CCCCTATGCG
CCCGAACAAG CTGACCATTG GGCCGCGCTG GAGCAAGCGT TCACGGAGGA AAACCTCGAT
AGCGAATGGC TGAACATCGG GGATGTAGAG GCCGATATCC CAAGTGCGAC GACGATTGAG
GCCGAGTATC GCGCGCCCTA CGTGGCCCAT CAGCCACTGG AGCCGCTGAA CGCGGTTGTA
TTGGTCGAAG ATGATGGCGC GCAGGTCTGG ACCGGACATC AGATGCCGCG CTTTCTACAG
CAGCAAGTGG CCGCAATTAC CGGCCATGAT GCCGATCAGA TCACGCTTCA CAATCAATAT
GCGGGCGGCT CTTTCGGGCA CCGTCTGGAG TTTGACTACG TCAAGCAAGC GGTTCAGATC
GCAATGCAGA TGCGCGGGCG GCCAGTTAAG CTGACCTATA GCCGCGAGAC GGATTTTGCC
CAAGATTTTC CAAGGCAGAT CACGATGGGG CGTGGGCGCG GCGCGGTTCT GGACGGTCAA
GTTGTCAGCT TTGATACGCA GATCGCGGCG CCCTCTGTTG TTCGGTCTCA AGTGGGTCGA
ATGGGGCAAT CCGTGCCCGG ACCAGACAGT CAGCTAGCCG CCGGTGTCTG GCAACAGCCC
TACGGGGTTG AGAACACGCG CATGCGCGCC TATGCGGTGG AAGGGCTGTC GCCCGTCTCG
TCCTGGCGCT CGGTCGGGGC ATCGGCCAAT GGGTTCATTG GTGAGGGTTT TCTGGATGAG
CTGATCCATG CCGCTGGCGC GGACCCGTTG GAGGAACGTA TTCGCCTGTG TACCCTGGAT
GACATCAGCC GCCAGGTCCT GGAGGCCGTC GGAGAGATGT CAAACTGGGG GGAGGCTTTG
CCGGAGGGCA CCGGACGTGG GGTCGCGCTG GTTCATGCCT TTGGCGTTCC CTGCGCAGAG
GTTGTGGAAG TCACGATGAC CGACGCGGGC ATTCGTTTGA ACACGGTCTG GGTCGCCGCC
GATGTCGGTC GTGTCGTCGA TCCGGTGAAC TTCGACAATA TCGTCAAAGG CGGCGTGATC
TGGGGCCTCG GCCACGCGAT CAATTCGGAG ATCACCTACA CCGATGGCAT CGCAGATCAG
ACGAATTTCC ATGCCCATGA AGGGATGCGG ATGCATCAAA CGCCCGAGAT CTTTGTGCGC
GGGTTGGAGA ATGGCCATGT GCGCGGGATC GGAGAGCCTC CGGTGCCACC TGCTCCTCCG
GCGCTGGCCA ACGCGATCTT CGCGGCCACC GGTCAGCGCA TCCGAGAGAT GCCGTTCTGG
AACCACATTG ATTTCGTCTG A
|
|---|
| Protein sequence | MGKLKTFTRR AFLVGSAAVA GGVAFGTYLV ARDPDNPNLQ GLAEGAASFN PWVRIDATGI
TLVTPHADIG QGAASMQAAL IAEEMDLDWA DFEIDFGRPA PAYWNTAMAG ESAPVLPWDD
SFGAQAMRST VGSLLKVIGM QGTGGSTSTP DSYVKLREAG AMARETLKLA ASQRTGISFT
EMRTEGAAVH LPDGTAIPYV DLATEAAGLE PVQGTPLRDP STWRLVGKDM PRIDIVPKST
GAPIYGLDIE LPDMARASLR MNPRKGGALN GFDASTAEAM QGVERVLGIP GGVAVIATNT
WYAMQALDAI DYDWGPAPYA PEQADHWAAL EQAFTEENLD SEWLNIGDVE ADIPSATTIE
AEYRAPYVAH QPLEPLNAVV LVEDDGAQVW TGHQMPRFLQ QQVAAITGHD ADQITLHNQY
AGGSFGHRLE FDYVKQAVQI AMQMRGRPVK LTYSRETDFA QDFPRQITMG RGRGAVLDGQ
VVSFDTQIAA PSVVRSQVGR MGQSVPGPDS QLAAGVWQQP YGVENTRMRA YAVEGLSPVS
SWRSVGASAN GFIGEGFLDE LIHAAGADPL EERIRLCTLD DISRQVLEAV GEMSNWGEAL
PEGTGRGVAL VHAFGVPCAE VVEVTMTDAG IRLNTVWVAA DVGRVVDPVN FDNIVKGGVI
WGLGHAINSE ITYTDGIADQ TNFHAHEGMR MHQTPEIFVR GLENGHVRGI GEPPVPPAPP
ALANAIFAAT GQRIREMPFW NHIDFV
|
|---|
| |