| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4139 |
|---|
| Symbol | |
|---|
| ID | 3936628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 4249113 |
|---|
| End bp | 4250186 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906525 |
|---|
| Product | oxidoreductase-like |
|---|
| Protein accession | YP_512081 |
|---|
| Protein GI | 89056630 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000162598 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCAGC CCATTTCGCT GGCAATCTGC GGGTTCGGCC TTGTGGGGCA ACGCCACGCA
ACGGCGGCGG CGAACCTGCC GGACGTCCAG ATCAGCGCGG TGGTGGAGCC GTCGCGGGAC
GGGCAAGCCA AGGCTGCGGC CATGGGGCTT GCGTGTTTCG CGACGCTGGA TGACCTCTTC
GCCAAGCAAT CTATTGACGG GCTGATCGTG GCCACGCCCA CTTCGCTGCA CGTGGAACAG
GCGTTGGCGG CTATCGCGCT GGGATGCCCG GTTTTGGTTG AGAAACCGAT CGCCACCAGT
GTCGAATCTG CGGCGACACT CGTCTCAGCC TCTGTCGCGC GGGGCGTGCC CGTCCTTGTC
GGCCACCACC GCCGCTACAA CCCGTTGATC CAGGCCGCCT ATGAGGTGAT CCGCGATGGC
CATATCGGTA ACGTGCGTGC GGTGAACGCC ACCTGCTGGT TCTACAAGCC TGATGCCTAT
TTTGATGTGG CCCCCTGGCG GAAAGAGGCG GGGGCCGGCC CGATTTCCGT TAACCTCGTG
CACGATATTG ACCTGATCCG GCACCTCTGC GGGGAGGTGG AGACCGTCTC GGCGCAGGCC
GCTCCATCAC AACGCGGCTA CGCCAATGAA GACGTCGCAG CCGCAGTTCT GACCCTGGCG
GGCGGAGCGA TCGCCACAAT CAGCGTGTCG GACAGCGTTG TCGCCCCTTG GTCGTGGGAG
ATGACGTCGC ATGAATATCC TGTTTATCCG CAGACAACCG AGAGCTGCTA TCTGATCGGC
GGCTCACACG GGAGTCTCTC AATCCCAGAT CTGCGGGTCT GGACCCATGC CGACGGTCAG
CGGGACTGGT GGACGCCCAT GTCGGAACGG ATGGTGCACC GCGAAACGTC TGATCCGCTG
GTCAATCAGA TCCAGCACTT CAGAGACGTC ATCGTGACTG AAGCCGAACC TCGCGTGCCC
GCCGAAGAGG GATTGCGTAC CCTTCGGGTG ATTGATGCGA TGCAGAGATC CGCCAAAACT
GGGAAGCCGA TCCACCTGCG CGACGCGGCG AGTGCCAAAG ATGCCGCCGA ATAA
|
|---|
| Protein sequence | MNQPISLAIC GFGLVGQRHA TAAANLPDVQ ISAVVEPSRD GQAKAAAMGL ACFATLDDLF
AKQSIDGLIV ATPTSLHVEQ ALAAIALGCP VLVEKPIATS VESAATLVSA SVARGVPVLV
GHHRRYNPLI QAAYEVIRDG HIGNVRAVNA TCWFYKPDAY FDVAPWRKEA GAGPISVNLV
HDIDLIRHLC GEVETVSAQA APSQRGYANE DVAAAVLTLA GGAIATISVS DSVVAPWSWE
MTSHEYPVYP QTTESCYLIG GSHGSLSIPD LRVWTHADGQ RDWWTPMSER MVHRETSDPL
VNQIQHFRDV IVTEAEPRVP AEEGLRTLRV IDAMQRSAKT GKPIHLRDAA SAKDAAE
|
|---|
| |