| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4134 |
|---|
| Symbol | |
|---|
| ID | 3936623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 4243673 |
|---|
| End bp | 4245223 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637906520 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_512076 |
|---|
| Protein GI | 89056625 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAT CTACCCATTT GCTTGCAGCC GGTGCTGCCA GCTTGGCCCT CACGACGGGC
GCGTTTGCCC AGGCGGACGA TACGCTTGTT GTCGGCCTCA GCACAGATAT CAGCACGCTG
GACCCCGCGC CGATCTCTTC GCGCGACAAT TCCAACATCG CGCGCCACAT CTTCGGCACG
CTCTATACGA TGAGCGGCGA TGGTGAGGCC CTGCCGGTGC TGGCCAACAA CCTTGAGATC
TCCGACGATG GGCTGGCCTA CGTCTATACA CTGAATGAGG GTCTGACCTG CCACGATGGC
GAAGCGCTGA CAGCGGAAGA TGCGGCCTAT TCCTTCAACC GCGCTGCTGA TCCGGAAAAT
GCCTTCACCG GCAACACGCC CGGCTTCATC TTTTCCTCGA TCGATTTTCA AGGCGCAGAA
GCGCTGGACG AGCTGCGCGT GCAGGTGAAT ATCGGCGCGC CAAACCCGAT TGCCTTCGGC
CTGATCGCGG AGGTGTTCAT CCACTGCATG GACAGCTATG AGGCGATGAC CCTTGATGAG
GCGGCCAGCA ATCCGATTGG ATCCGGCCAC TACCGCCTGG TGGAATGGCG TCGCGGTTCC
GAGGTCGTGC TTGAGGCTGT CGAAGGCGCA GAGGTGGGCT TCCAGAACCT CGTCTGGCGG
ATCATCCCCG AAGCCTCCAC TCGCGCGGCG GAACTGATGG CCGGTTCCGT TGACATCATC
ACCAATGTGG CCCCGGACCA GATGGATGTG ATCAACGCAT CGGGCGCGGC AGAGGTGAAC
CCGATCCAGG GCACACGCCG CATGTATGTG GGCTTCAACC TGTCCGAGAC GATGGCGCAG
GAACCCGGCG GCGACGCGAT CCAGGATCCG GCCGTGCGTC GGGCGCTGCA ATATGCGGTC
AACGTTCCGG CGATTTGTTC GCAGCTTCTG AACTTTGAGT GTGAGCGGAT GACCGGCATC
GTGAACCCGC CCAATGCCAA CCAGAGCCTG GAGCCCTACC CCTATGATCC GGAAGAGGCC
GAGCGTCTGC TGGATGAGGC GGGTTGGCCC CGGGGCGACG ATGGCACCCG CTTCTCAATC
GCCTTCCAAG CCGGTCAGGG TCGTTACCTG AATGACGCCA ACGTCGTGCA GGCCATCGCC
CAATATCTCA GCGATGTGGG TCTGGATGTC GACTTGCAGA TCATGGAATG GTCCAGCGTC
TACATTCCGA TCATCCGGGA ACGCAATGCT GGCCCGCTCT ACTTCATCGG CTCCGGTGGG
GCGTTGTGGA GCCCGCTCTA TGACATGACC GACCTGGCCG CTGTCGATTC AGGCACCAAC
TACACCCATT GGGATGACCC CCGCTGGTTT GACCGTTGGT CCGACATCGC CGCCGCCGAG
ACGGAGGAGG AGACCCGCGA GATCGTGGAT GAGATGTTGC AGGTCTTCTA CGATGATGGC
CCCTGGCTGC ACCTCTACTT CCAGCCGGAC TTCTACGGTG TGTCCAACCG CGTGAACTGG
ACCCCGCGGC CCGATGAGAA GGTTTACCTC TGGGATGCGA CGCTGAACTA A
|
|---|
| Protein sequence | MIKSTHLLAA GAASLALTTG AFAQADDTLV VGLSTDISTL DPAPISSRDN SNIARHIFGT
LYTMSGDGEA LPVLANNLEI SDDGLAYVYT LNEGLTCHDG EALTAEDAAY SFNRAADPEN
AFTGNTPGFI FSSIDFQGAE ALDELRVQVN IGAPNPIAFG LIAEVFIHCM DSYEAMTLDE
AASNPIGSGH YRLVEWRRGS EVVLEAVEGA EVGFQNLVWR IIPEASTRAA ELMAGSVDII
TNVAPDQMDV INASGAAEVN PIQGTRRMYV GFNLSETMAQ EPGGDAIQDP AVRRALQYAV
NVPAICSQLL NFECERMTGI VNPPNANQSL EPYPYDPEEA ERLLDEAGWP RGDDGTRFSI
AFQAGQGRYL NDANVVQAIA QYLSDVGLDV DLQIMEWSSV YIPIIRERNA GPLYFIGSGG
ALWSPLYDMT DLAAVDSGTN YTHWDDPRWF DRWSDIAAAE TEEETREIVD EMLQVFYDDG
PWLHLYFQPD FYGVSNRVNW TPRPDEKVYL WDATLN
|
|---|
| |