Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_4022 |
Symbol | |
ID | 3936510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 4125403 |
End bp | 4126044 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637906407 |
Product | anti-sigm factor, ChrR |
Protein accession | YP_511964 |
Protein GI | 89056513 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAA TGAACCACTC CGTCCCCGAC GACATGCTGA TGGGCTATGC GTCCGGATCG CTTGCGAAAG CCTTCGATCT GGTGCTGGCG ACCCATGTGT CGCTGAACGA TGACGCCCGC GCCCGGCTAG AGACGTTTGA AGCGCTTGGC GGCGCGATCC TCTGCGGCAT GGACACCGTT GATGTAGACG ACGACAGCCT GGAACAGACG ATGGCCAAGA TCCGTGGCAA TGCGCCAATT GAACGGCCCG CGCCGTCCGA GGGCCTGTTC CCGACGCCCC TGCAATCCAT GGTCGGTGGC GATGTGGATG CCGTGCGCTG GCGCAGCGTT GGCGGCGGCG TGAAGCAATG TGTGCTGCAT TCCGATGACG GCGGCACCGT CCGGCTTCTG TCGATTGCGG CGGGCCGGGC CATGCCCGCC CACAGCCACC ACGGAACGGA AATGACGCTT GTGCTGCAAG GCGCGTACCG GGACGACGAC GGCATCTTCG CCCGGGGCGA TCTGGAACTG GCGGACACCG ACACCAACCA CCAGCCAGTG GCCGAGCCCG GTCAGGATTG TATCTGCCTT GTGGCCACCA ACGCCAAGCT GAAGTTCCAG GGCCTGTTGC CGCGCATTGC TCAGCCCTTC CTCGGCATCT GA
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Protein sequence | MTEMNHSVPD DMLMGYASGS LAKAFDLVLA THVSLNDDAR ARLETFEALG GAILCGMDTV DVDDDSLEQT MAKIRGNAPI ERPAPSEGLF PTPLQSMVGG DVDAVRWRSV GGGVKQCVLH SDDGGTVRLL SIAAGRAMPA HSHHGTEMTL VLQGAYRDDD GIFARGDLEL ADTDTNHQPV AEPGQDCICL VATNAKLKFQ GLLPRIAQPF LGI
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