| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3899 |
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| Symbol | |
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| ID | 3936380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3997507 |
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| End bp | 3998964 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637906277 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_511841 |
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| Protein GI | 89056390 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.553223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTCT TAGGACGCGC TCTGATCGGT CTTTTTCTGA CGGCCTGTAC GTTTGGGATG
CTCACGGTTG CGGGCTACCT GACCTATGAT GCGTTGCAAG CGTCCTGGGC CGATGAGGGC
CGCGCACTAC CATCGCGCGA GCGTGTCTTC GCGGCGGAAG TGGCCCCGCT TGTGTTTGGG
GAAGAGACGC CGGTTCTGAC GGCCTTTGGT GAAATTCGAT CCCGCCGCAC GCTGGAGTTA
CGGGCCCCGT CCGAGGGCAC GGTGATCGAG CTGGCCGATG GGTTTGAGGA TGGCGGCGCT
GTTACGGCTG GCCAATTGTT GTTGCGTGTC GACCCTGCAG AAGCGCAATC AGCGCGTGAT
ACCGCAAGTG CGGACCTGCG CGATGCGGAG AATGAGCTGG CGGAGGCCAC GCGCGCGCTG
GAGCTGGCCG AGGAAGAAGT CACCGCCGCG CGCAATCAGG CGGAAATCCG CAGCCGCGCC
TTGATCCGTG CGCGCGATTT GCTGGAGCGC GGCGTGGGAT CGACGGCCGC TGTGGAAACG
GCAGAGCTGG CGGAGGCGAC CGCCAATCAG CAAATCCTGT CGCAACGCCG CGCGCTGGCG
CAGGCAGAGG CCCGGGTGGA CAGCGCGGGC ACAGCGCTCG ACCGCCGCCG CATTGCCCTT
GCCGAGGCCG AGCGGCGCTT GGCTCAGACG GAGCTGCGCG CCGAATTCAG TGGTGTGCTG
ACGGAGGTGG ACGCCGCTGC CGGTCGCCTT GTATCCCGCA ATGAACGCCT CGCGTCGCTG
ATTGATGCCG ATGCGCTGGA GGTCGCGTTC CGCATCTCCA CCGCGCAATA CGTCCGCCTG
TTGGATCAGG ATGGCGCCTT GCCGCAACGG CCCGTGCGGG TGATCCTCGA TGTCTTCGGC
CTCGATGTGC AGGCACAGGC AACATTGACC CGCGAGAGCG GTGCGGTGGA GGAGGGACAA
TCGGGCCGCC TTTTGTTTGC GCGCCTTGAT GAGGTGCGCG GTTTGCGCGT CGGTGATTTC
GTGCGCCTCG AAGTCGACGA GCCGACCCTG CCGTTCGTGG CGCGCCTGCC ATCTGCCGCG
CTTGGGTCTG ATGGGCAAAT TCTTCTTCTC GGGGAGGAAG ACGTGCTGGA AGCCGTCGAT
GTCGAGTTGA TGAGCCGCCA GGGGGATGAC GTCCTGATCC GTGCCCGCGG TGTTCAGGAT
CGTGATGTCG TTCTCGCGCG CACGCCGGTT CTGGGGGACG GCATCCGCGT CAATCCGATC
CGCCCCCAGA CCGGCGACGA GGCGGCGGAA CCCGATACCA TTGCCCTGGA TCCCGACCGC
CGCGCGCGGC TGATCGCCTT TGTGGAAGGC AACGGCTTTA TCCCGGCGGA CGTTCGGGAA
CGAATGCTGC GTCAGTTGAA CGAGGACGAG GTGCCCGCCC GCATGGTCAA CCGTCTCGAA
GCGCGGATGG GCAGCTGA
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| Protein sequence | MRFLGRALIG LFLTACTFGM LTVAGYLTYD ALQASWADEG RALPSRERVF AAEVAPLVFG
EETPVLTAFG EIRSRRTLEL RAPSEGTVIE LADGFEDGGA VTAGQLLLRV DPAEAQSARD
TASADLRDAE NELAEATRAL ELAEEEVTAA RNQAEIRSRA LIRARDLLER GVGSTAAVET
AELAEATANQ QILSQRRALA QAEARVDSAG TALDRRRIAL AEAERRLAQT ELRAEFSGVL
TEVDAAAGRL VSRNERLASL IDADALEVAF RISTAQYVRL LDQDGALPQR PVRVILDVFG
LDVQAQATLT RESGAVEEGQ SGRLLFARLD EVRGLRVGDF VRLEVDEPTL PFVARLPSAA
LGSDGQILLL GEEDVLEAVD VELMSRQGDD VLIRARGVQD RDVVLARTPV LGDGIRVNPI
RPQTGDEAAE PDTIALDPDR RARLIAFVEG NGFIPADVRE RMLRQLNEDE VPARMVNRLE
ARMGS
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