Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3894 |
Symbol | |
ID | 3936375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 3989815 |
End bp | 3991569 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637906272 |
Product | acyl-CoA dehydrogenase-like |
Protein accession | YP_511836 |
Protein GI | 89056385 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0512986 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGCGCC CCAACACGAT CACGGCCCTA GCGCGAAACG ACCGCCCGCG CAAATCGGCC AGCCTTGGGA GAGATCACAT GTCCTACCGC GCGCCCGTCT CCGACATCAC ATTTTGCCTC GACCACGTCG TGGGCTTTGA CCGGGTTCAG GCCTCCCCCA CATTTGAAGA GGCCACCCCG GATGTCGTTC AGGCGATCCT GACGGAGGCC GGCCGCATCT GTGAAGAGGT GATCGCACCT CTCAACCGCG CAGGCGACGA GACGCCCGCC GCGCTGGAGA ACGGCGTGGT GCGCACGTCC CCCGGATATG CAGACGGCTA CCGGGCGATT GCCGAGGCGG GCTTTGTCGC GATCTCTGCC GATCCTGACT ATGGCGGAAT GGGTCTGCCC CTGACCGTCA CAACGGCCGT CAACGAGATG ATTGGCAGCG CGTGTCTGTC GCTGGAATTG AACCCCCTCA TGACCCAGGG CCAGATCGAG GCGCTGGAGC ATCACGCCAG CGATGCCATC AAAGAGGTGT ACCTGCCCAA GCTGACCTCC GGCGAATGGT GCGGCACGAT GAATTTGACA GAGCCCCAGG CCGGATCAGA CGTGGGCGCA CTGACCACCA AAGCCGAGCC TCAGGGCGAC GGCACATATG CGATCAGCGG TCAGAAAATC TACATCTCCT GGGGTGATCA CGATATGGCG GACAACATCT GCCACCTCGT CCTCGCCCGC CTGCCCGGCG CGCCCAAGGG GACCAAAGGC ATCAGCCTTT TCCTTGTGCC CAAGAAAATT CCGGACGCCG ATGGCAACCC CGGCGTCGCC AATAGCCTGC AGGTCGTCAG CATCGAACAC AAGATCGGGC TGCACGGCTC CCCCACCTGC GTGATGCAAT ATGATGGCGC ACGGGGCTGG CTGATTGGCG AGGAAAACAA GGGGATGGCC GCGATGTTCA CGATGATGAA CAACGCCCGT CTAGGTGTGG CCGTCCAAGG TCTGTCCGTG GCGGAGCGGG CCTATCAACA GGCGCTGGCG TTTGCGACTG ACCGCAAGCA GGGCCGCAGC CTGATTGAGA ATGGCACCGG CACGATCCTC GACCATGCGG ACGTGCGCCG GATGCTGATG GAGATGAAGG CCGAGATCTT CTCTGTTCGC GCCATGGCGC TGGACCTCGC TGTATCGCTG GACCTTGAAA AGACTGGCGA CGCACAGGCC GCGAGCCGTG CGGCCTTCCT GACACCCATC GCCAAAGTTT ATGGGACGGA TACGGGCGTA AAGCTGGCCA ATATGGGTAT CCAGATCCAT GGTGGCATGG GGGTCATCGA AGAAACGGGC GCGGCCCAGT TCGTCCGTGA TGTCCGTGTG ACGACGATCT ATGAGGGGAC CACGGGTATT CAAGCGATGG ACCTCGTGGG GCGTAAACTG ATGGATGGCG GCGCGGCTGC GTTTGCGCTG CTGGACGAGG TGGAGGCTTT GGCTGACCCC GTCCTCACCC CCATGGCGCA GGCCCTGCGC AAGACGACCG AGGATGTCCT GGCGCTCGAC ATGAATGATC GTTTCGGGGG CGCGGTGCCC TTCCTGATGG CCTTCGCCCG CGTGCTCGGC GCATATTACC ACCTGAAGGC TGCCGGCGCT GGTGATAAGA CCCGCCAAAG CCTGGCGCAT TTCCATATCA CCCGTCTCCT GCCCGAGGCT CATGCGATGA TGGCGCAGGC GCGCTGCGGG TCCGGGGGGC TCTACGATCT GTCCCCGGAC GAGCTGGCGG CATAG
|
Protein sequence | MMRPNTITAL ARNDRPRKSA SLGRDHMSYR APVSDITFCL DHVVGFDRVQ ASPTFEEATP DVVQAILTEA GRICEEVIAP LNRAGDETPA ALENGVVRTS PGYADGYRAI AEAGFVAISA DPDYGGMGLP LTVTTAVNEM IGSACLSLEL NPLMTQGQIE ALEHHASDAI KEVYLPKLTS GEWCGTMNLT EPQAGSDVGA LTTKAEPQGD GTYAISGQKI YISWGDHDMA DNICHLVLAR LPGAPKGTKG ISLFLVPKKI PDADGNPGVA NSLQVVSIEH KIGLHGSPTC VMQYDGARGW LIGEENKGMA AMFTMMNNAR LGVAVQGLSV AERAYQQALA FATDRKQGRS LIENGTGTIL DHADVRRMLM EMKAEIFSVR AMALDLAVSL DLEKTGDAQA ASRAAFLTPI AKVYGTDTGV KLANMGIQIH GGMGVIEETG AAQFVRDVRV TTIYEGTTGI QAMDLVGRKL MDGGAAAFAL LDEVEALADP VLTPMAQALR KTTEDVLALD MNDRFGGAVP FLMAFARVLG AYYHLKAAGA GDKTRQSLAH FHITRLLPEA HAMMAQARCG SGGLYDLSPD ELAA
|
| |