| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3839 |
|---|
| Symbol | |
|---|
| ID | 3936319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3934158 |
|---|
| End bp | 3934952 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906217 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_511781 |
|---|
| Protein GI | 89056330 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAGGCG AGGGTTCGGA CAGCCAGGAC GGGACGGTGG GCAAGGCGCT TTCGGTGCTG
GACGCCGTGG CCGCTTTTGG GCGGCCTGTG CGATTCGGTG AACTCCTGCA AGATAGCCCC
TACCCCAAAG CGACGCTCTA TCGCCTGGTC CAGGTTCTGA CGAAGCAGTC GATGCTGGTC
TATGAGCCCG ACCGCCAGAC CTATGCCCCC GGCCTGCGCC TTGTGCGGCT GGCCCATGCG
GCGTGGCAGA CGACCTCACT CGCCCCCGTG GCCCGCCCAT ATCTGGAAGC GCTGTCGGCG
GATATCGGAG AAACCATCCA CCTTGCGCAG CTTGATGGCA GCAGCGTGCT GTATGTGGAT
AAAATCAACG CCCGCGACCC ATTGCAGATG TATTCACAGG CCGGAAAGGT CGCGCCGTGC
TATTGCACCG GGGTGGGTAA GGCGATGATC GCGTTCCTGC CCGAAGACCA GCTTGAACCG
ATCCTGCGCC AGCAAAGCTA TCACGTCTTC ACCGCCCATA CCTTTCCCGA CGCCGCTGCC
CTTCGCGAAG AGCTGCGCGC CATCGTGGAT CGTGGCCATG CCTACGACCG AGAAGAACAC
GAGCCGGGCA TCATCTGCGT CGCGGTCCCA ATTCTGACCC GGTCCGGGCG GGTTCTGGGT
GCGGTTTCTG TCACCTCTTC AACCGAGCGA ACATCACTCA CCGGGCTAGA GGCCCATCTG
CCCCGCCTTC ACTCGGCGGT TTCATCCATT GCGGGGGAGG CCCAGGCTTG GCGCTTCCCC
GATGCAGCAG AATAA
|
|---|
| Protein sequence | MVGEGSDSQD GTVGKALSVL DAVAAFGRPV RFGELLQDSP YPKATLYRLV QVLTKQSMLV
YEPDRQTYAP GLRLVRLAHA AWQTTSLAPV ARPYLEALSA DIGETIHLAQ LDGSSVLYVD
KINARDPLQM YSQAGKVAPC YCTGVGKAMI AFLPEDQLEP ILRQQSYHVF TAHTFPDAAA
LREELRAIVD RGHAYDREEH EPGIICVAVP ILTRSGRVLG AVSVTSSTER TSLTGLEAHL
PRLHSAVSSI AGEAQAWRFP DAAE
|
|---|
| |