| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3797 |
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| Symbol | |
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| ID | 3936277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3884359 |
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| End bp | 3885309 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637906175 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_511739 |
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| Protein GI | 89056288 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00053557 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGAAAC CATTTGCAGG TGCGCTAGTT GCCGCCTTTG TCGCATTGGC CGCACCCGTT
GCCGCACAGA CAGTCGGGGT GGCGACGTCT AATCCGGGAT CGTTGTTTCA TAACATCGGC
ACCGCCGTGG CAAATGCCGC GAATGCGGGC GGCGTAAATT CCACGATCCA GCCCGCAACC
AGCCCGAACC AATACATCCC GTTCGTGAAC GCTGGCGGGA TCGAGTTTGG CGTCGCGAAT
TTGCAGGAGG TCAACTACGC CTTGACCGGG GCCGAATGGT GGAACGGCGT CGAAAACCCC
GACCTGCGCA TCGTCGCGAT GTTGCAACCG CTGGTCACCG CGATCTTTGT GCGCGCCGAC
AGTGACATCA CAGATCTGGC AGGTCTTGCC GGACAACCCG TGACCGATGG CTATACTGCG
CAGAACACGA TTCTGCCGCA GCTGTCGGCC TATTATGCGA CTGCGGGCAT GACCCGCGAC
GATATCGACC CGATCAATGT TACCTCCGTG GTGGCGGGCG GCGACGCATT CATGGCGGGC
GATACCGTTG CGTTCTATTT TGCTCACGGT GCGGGCAAGG TGCGTGAGGC TGACGCGGCG
GTGGGTGGCT TGCGGGCATT GCCGGTCGCG GACCCCAGCG ATGAGGCGCT GGCCGCCGCG
CAGAACCATT GGCCAACCGC GTTCTTCATG GAAATGGCCG CGGGCTCCAT GCCGGGGATC
GCCGAAGACG GCACGTTCAT CGCCTTTCCA CAAGTGATTT TCACCCATGC AGGCGTTCCT
GATGAGGTCG TTTACGCCTT TACCCAGGCG CTCCACGACA ATGCGAGCGT GATGGGGGAG
ACCTTTCCGC CCATGCGCGC CTTCCGGCCT GAACATATGC GCGCCGATGC GGGCGTGGCC
GCGTTCCACC CCGGTGCGAT CCAGTTCTAT GACGAGATAG GCATCGAATA A
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| Protein sequence | MTKPFAGALV AAFVALAAPV AAQTVGVATS NPGSLFHNIG TAVANAANAG GVNSTIQPAT
SPNQYIPFVN AGGIEFGVAN LQEVNYALTG AEWWNGVENP DLRIVAMLQP LVTAIFVRAD
SDITDLAGLA GQPVTDGYTA QNTILPQLSA YYATAGMTRD DIDPINVTSV VAGGDAFMAG
DTVAFYFAHG AGKVREADAA VGGLRALPVA DPSDEALAAA QNHWPTAFFM EMAAGSMPGI
AEDGTFIAFP QVIFTHAGVP DEVVYAFTQA LHDNASVMGE TFPPMRAFRP EHMRADAGVA
AFHPGAIQFY DEIGIE
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