| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3770 |
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| Symbol | |
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| ID | 3936250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3853837 |
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| End bp | 3855150 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637906148 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_511712 |
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| Protein GI | 89056261 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGAGA GTTTCGAGCT TGCGCTGATC GGCCTGGCCG CCATGTTCGC GCTGATCATT
TTCCATGTGC CAATTGGCGT CGCGATGCTG CTGGTCGGTG TCGTCGGAAT ATCCGTTTTC
ATCGGGTTCG ACCGCGCGCT GTCCCTTGTC TCGGCGGAGA CATATTCCGC CATCGGTTCT
GAAAGCCTTG CCGTCATTGC CATCTTCCTG ATGATGGGAT CCTTCGCGAC CGTTGCCGGT
CTGTCGGCGG ACCTGTTCCG CATTGCCAAC GCCTTCATGG GCCACCGCAA AGGTGGATTG
GCTGCGGCGA CGATCGGGGG ATGCGCGGGC TTCGGGGCGA TCTGCGGCTC GTCCGTGGCA
ACGACCGCAA CGATGGCGCG CATCGCGGTC CCCGAGATGC TCCGCCGGTC CTACGATGGC
GGGTTCGCGG CGGGATCTGT CGCTGCGGGC GGCACGCTCG GCATTCTGAT CCCGCCCTCG
GTGATCATGG TGCTCTACGC CGTGCTGACC GAAAACTCCC CTCTCGCATT GTTTGTGGCC
GGTCTTGTTC CCGGGCTGAT CGCCGTAGTC CTCTACCTGA TCGCGATTGA ATGGACCGCA
CGGCGGAACC CCAAGCTCGC CCCCGAGGCG GAGTGGATGC CATGGCCCGA GCGCTGGAAA
GTCGTCGCCA GCGGATGGCG GGCAATTGTG GTGATCATCG GCGTCTCGGT CGGGATTTAC
GGCGGTATTT TCACCGTTCT CGAAGCCGCC AGTGTCGGCG CCGCCCTGAC CTTCATCTTC
GCCCTGTTTT CCGGCAACCT GACCTGGAAA GCCTTCGCGG AGTGCCTGAA AGAAACCGCA
GGCAACACCT GCCTGATCTT TGTGATCGTC ATTGGTGCAA ACGTCCTGGG ACGCTTTCTG
GCCTTCACCC GCGCCCCCGA CCTGATCGTC AGCGGGATCG AGGCGTTCGG TTGGCCGCCC
CTCGCGATCC TGCTGGTCTT GATGGTGTTC TACATCATCC TGGGCAGCAT CTTCGACACG
GTCGCCGCCA TGGTGATCAC GCTCCCATTT ACCTATCCGC TGGTCGTTGG AACACTTGGG
ATGGACCCGA TCTGGTGGGG CATCGTGATG GTCATGGTGA TGGAAATCGG GATGATCACC
CCGCCCATCG GGATAAATGT CTTCGTGATC CACGGGGTGA CGCGGGACAT ACCGCTCAGC
CGGATCTACT CCGGCATCGT TCCTTATCTG GTCGCCGATT TCATACGCCT CGCGCTGGTG
GTCGCGATGC CGGTTCTGGC GATCGGGCTG CCGACCCTGC TGGGCTACAT GTAG
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| Protein sequence | MTESFELALI GLAAMFALII FHVPIGVAML LVGVVGISVF IGFDRALSLV SAETYSAIGS
ESLAVIAIFL MMGSFATVAG LSADLFRIAN AFMGHRKGGL AAATIGGCAG FGAICGSSVA
TTATMARIAV PEMLRRSYDG GFAAGSVAAG GTLGILIPPS VIMVLYAVLT ENSPLALFVA
GLVPGLIAVV LYLIAIEWTA RRNPKLAPEA EWMPWPERWK VVASGWRAIV VIIGVSVGIY
GGIFTVLEAA SVGAALTFIF ALFSGNLTWK AFAECLKETA GNTCLIFVIV IGANVLGRFL
AFTRAPDLIV SGIEAFGWPP LAILLVLMVF YIILGSIFDT VAAMVITLPF TYPLVVGTLG
MDPIWWGIVM VMVMEIGMIT PPIGINVFVI HGVTRDIPLS RIYSGIVPYL VADFIRLALV
VAMPVLAIGL PTLLGYM
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