| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3554 |
|---|
| Symbol | |
|---|
| ID | 3936029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3617777 |
|---|
| End bp | 3618712 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637905929 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_511496 |
|---|
| Protein GI | 89056045 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGC ATCCTCAAAC CAACGTCATG CCCGGGGGAT CCCGGGCACG ACGCTCGCTT
TATTGGCGAT ACATGGTGGA GCCGTTCCTT TACCTGTCGC CCGCCATCGT CCTGATCGGC
ACGGTCATGC TGATCCCGCT GGTCATCGGC ATCTCCTATT CCTTTCAGTC CATCGAGATC
CTGAACCCCT TCGCCACTGG CTGGGTGGGG TTTGAGAATT ACGTTGATCT CTGGTCTGAT
CGCCGCTTCT GGATCGCGCT GGAAAATACC TTCTGGTGGA CGTTTTGGTC CGTCTCATTC
CAATTTCTTC TGGGCCTTGG CCTCGCGCTG CTGCTCAACA CCCACTTCTT CGGAAAGCGC
TTGTTTCAGG CGCTGGTCTT CCTGCCTTGG GCGGTGCCCA CATTCCTGTC GGCGCTGACC
TGGTCATGGC TGTTCAACCC GACCATCGGC CCCCTGCCCC ATTGGATGGC AGCCCTTGGC
ATCTTGGAAG AACCCTACAA CATCATGGGC GACCCGGATC TGGCGCTTTG GGGACCGATC
GTGGCCAACA TCTGGTTCGG CGTGCCGTTC TTTGCGATCA CGCTGCTCGC CGCTCTGCAA
TCCATCCCGG AGGAGCTGTT TGAGGCCGCC GAGATCGACG GCGCATCCCC CTGGCAGACC
TTCACGAAAA TCACCCTGCC CTTCCTCGCA CCCATGATCG CCATCACCGT CATGCTGCGC
ACGATCTGGA TCGCTAATTT CGCCGATCTG ATCTTCGTGA TGACGGGCGG TGGACCCGCA
AATTCGACCC AGATCCTCTC GACATACATC TTCACCACCG CCTTCCGACG CCTTGATTTC
GGGTTCGCAT CGACCATCGC GGTGGCTCTC CTGATCATCC TTCTGGCCTA TGCGATCTTG
GTGCTGTGGC TGCGCAAGAA ACTGGTGAAG GTGTAA
|
|---|
| Protein sequence | MTAHPQTNVM PGGSRARRSL YWRYMVEPFL YLSPAIVLIG TVMLIPLVIG ISYSFQSIEI
LNPFATGWVG FENYVDLWSD RRFWIALENT FWWTFWSVSF QFLLGLGLAL LLNTHFFGKR
LFQALVFLPW AVPTFLSALT WSWLFNPTIG PLPHWMAALG ILEEPYNIMG DPDLALWGPI
VANIWFGVPF FAITLLAALQ SIPEELFEAA EIDGASPWQT FTKITLPFLA PMIAITVMLR
TIWIANFADL IFVMTGGGPA NSTQILSTYI FTTAFRRLDF GFASTIAVAL LIILLAYAIL
VLWLRKKLVK V
|
|---|
| |