| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3528 |
|---|
| Symbol | |
|---|
| ID | 3936003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3585502 |
|---|
| End bp | 3587121 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637905903 |
|---|
| Product | SARP family transcriptional regulator |
|---|
| Protein accession | YP_511470 |
|---|
| Protein GI | 89056019 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0172625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCGAGT CTACGCTTCA GATCCACTTG AACGGACGGT TTCGTCTTGT TGGTGCCAAT
GGAGCACCCA TCGAACTGGC TAGCGTGAAG GCTCAGGCCA TGATTGCGCT TCTGGGAACC
GAAGAACACA TGACGCGAAG CCGAACGTGG CTTCAGGATA AGTTGTGGAG CGACCGGCTC
CATACACAAA GCGCCAACAA CCTCAGACAG TTGATTTTTC AATTACGCAC GGCGCTCGGA
CCAGTAGCCG GCGTTCTGGT GACCAATCGC GGATTGGTCG GCCTCGATCC CCTGCAGGTT
GAGGTTGTTG CTGCAGGAGA GGGCGAGTTT CTCGAAGGTA TTGATGTTCG AGATCCGGAA
TTTGAAAACT GGTTGGCGCA AAAGCGAGCA GAGGCTGATC CGCCAGCAGA GGGCAAAGCG
GCCCTGCCCG CCCGATACGG ATCACCAAGC ACTCCGCTCA TTAGAAAGGA AACCGTCCGG
TCTCCCCGTC AACTGACCAT CGAGTCTGCA AACGAACTCG ACAGCTGGCT CGGTCGCTTT
GAAACGCGGG TCGCCGAAAT GATACATCGA TCCCTGCGCG AATTGCTGGA TGTCGACCTC
GTCGAGCCAG GTCAAAACCT CGATGGTCGC GGCTCCGTAG CCCTATACCT GCACGCTTAT
TCAGAAACGG CGGGGCAGGT CGGAATACGC GTGTCAATTT TCGAGGGCCT CGGTCAGGGA
AAATTTTGGT CCGATAGCGC AACCGGAAAG GCCCCCGGTC CCCGAGAGGA TCCCGGTTGG
CCGTTTCGAA ATCTTTGCCA CCGGGGCTGT GACGCTTTGG TAGATCGTCT GATACAGGCG
ACTCCGTCCA CGGGATCCGA GATTGACGCC ATTTCCCTAG CCGGGATGGC AATGCGACGG
ATGTTTTCGA TGTTGCCGGG CAGCATTGGA GAAGCCGCCA ACCTGCTCCA GCAAGCCAAC
AACATCAGAC CTAGGGGCCT ATACTCGGCA TGGCAGGCTC AACTGGCCGT GATTGAATAC
GTTGAATCCG GCGGCGAGCG GCGGGAGGAA CTCGCAGATC TAGCCGACGA ACTCTGTTAC
CGCGCCATGG CGGCAGAAGG AACTAACGCA AACGTCCTCG CGGCTGTGTC CCATGCAAGA
CTTGTCTTCG ACAACGACCT TGGGGCCGCC GTGGAGTTGT CGAGATTGGC AGTGTTGGCC
AATCCCTCAA ACCCCCTAGC TTGGAGCGCG CGCGCCAACG CCCTCTTGAA CGCAAACGAA
CCCAAGATGG CTTATCAGGC AGCCAGCGCA GCGCACTCTC TTTCACGAGA AACGACCTTC
CGATACTGGA CAGAATTCCA GCTTGCCACG ACGGCGGTTG AAACCGGCAA CCCCGAAAAA
GCCGTTGCCC ATTCGGAGCG GGCAAGGGCC CTCAACGCTC GTTACCGTCC AGCCCTTCGA
TACCTGATCG GTCTCCATGC CGAATTGGGT GACTCTGATG CCGCAAGAAG CAACCTTGCA
CGCTTGAGGA GGATCGAACA AGGTCTGACT GTAGAACGTT TCGCTATGAA TGAAACCTAT
CCGGTTTCGA TGATGCGAAA GGCAGGTTTG GTAGATATCT CTAAGCTTTC TGATCTTTAA
|
|---|
| Protein sequence | MAESTLQIHL NGRFRLVGAN GAPIELASVK AQAMIALLGT EEHMTRSRTW LQDKLWSDRL
HTQSANNLRQ LIFQLRTALG PVAGVLVTNR GLVGLDPLQV EVVAAGEGEF LEGIDVRDPE
FENWLAQKRA EADPPAEGKA ALPARYGSPS TPLIRKETVR SPRQLTIESA NELDSWLGRF
ETRVAEMIHR SLRELLDVDL VEPGQNLDGR GSVALYLHAY SETAGQVGIR VSIFEGLGQG
KFWSDSATGK APGPREDPGW PFRNLCHRGC DALVDRLIQA TPSTGSEIDA ISLAGMAMRR
MFSMLPGSIG EAANLLQQAN NIRPRGLYSA WQAQLAVIEY VESGGERREE LADLADELCY
RAMAAEGTNA NVLAAVSHAR LVFDNDLGAA VELSRLAVLA NPSNPLAWSA RANALLNANE
PKMAYQAASA AHSLSRETTF RYWTEFQLAT TAVETGNPEK AVAHSERARA LNARYRPALR
YLIGLHAELG DSDAARSNLA RLRRIEQGLT VERFAMNETY PVSMMRKAGL VDISKLSDL
|
|---|
| |