| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3521 |
|---|
| Symbol | |
|---|
| ID | 3935996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3578679 |
|---|
| End bp | 3579947 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637905896 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_511463 |
|---|
| Protein GI | 89056012 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00222857 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTG CCAAACGAGG TCGCACATAC CACCTCCGTC GCCGGGTTCC GCGTCGGTAT
CGCAGGGTTG AACCGCGTGG AACGGTCTGG ATCAGCCTGC ATACGGACTC GGAGACGGTT
GCCCGGAGCA AGGCCGACCG GGCGTGGAGC CAGATGATTG AGGCGTGGGA GGCGCGGCTG
GCCGGGAACA GCGCAGACGC GGAGGCGCGA CACGAGGCGG CGCGCGATCT GGCCCGTACG
CGGGGCTTTG GATACTTGGA TGCAGGCGCT GTAGCAAAGC TGCCAGTCGA GGATGTCGTC
GAGCGGGTTG AAGCGATCCC GGTGCCGGCA AAGCAGCCCG ACCCGGTTGA AGCCGCCACA
CTTCTCGGCA CGGTCCCTAA GCCGCGCACC ACGGTCACCA AGGCGCTGGA GCTTTACTGG
ACGCTGGCCC GTGAGAAGAC CTTCGGCAAA AGCGAGGACC AAATGCGCCG CTGGGAAGCC
CCCCGGAACA AAGCCATCAA AAATTTTGTG TCGGTCGTCG GCGACAAGGA AATCGCCAAC
ATCACCCGCG ACGACATGCT GGACTTTCGC CAGCATTGGC TTGATCGGAT CGAAGCAGGT
GAGGTCACGG CCAATTCCGC TAACAAGGAT CTGATCCATC TCGGCGATGT GCTGAAGACC
GTGAACACGA TGAAGCGGCT TGGGCTGGAT CTTCCGTTGG GTGAGTTGTC GTTCAAACAG
GGTGAGGCTC GGACCCGTCC ACCATTCAGT AATGATTGGA TCACGACGCG CCTGCTTACG
CCCGGTGCGC TCGACGGGTT GAACAACGAA GCGCGGGGCC TACTGCTTGG TATGGTGAAC
ACAGGCTACC GCCCGTCCGA GGGCGCCGCG CTGACAGTGG ACACGATCCG GCTCGATTGC
GACGTGCCGC ATATCTCCAT CGAACCCGAC GGGCGGCAAC TCAAGTCGCA CCATGCTCGC
CGAGTCATTC CCCTAACCGG TGTCTCCCTG AAGGCATTTG AGCAATTCCC CGAGGGCTTC
CCTCGCTACC GCAACCGAGC CACGCTCAGC GCGGTTGTTA ACAAGTTCCT CCGCACCAAC
GGCCTGCTCG AGACGCCGCG CCATTCCTTT TACTCGCTGC GTCATTCTTT TGAGGACCGC
ATGCTCGCTG CCGGGATCGA CGACCGGATA AGGCGTGATC TGTTTGGTCA TCGGTTGGAT
CGGGAACGGT ACGGCAAGGG CGCGTCGCTG GAACATGTGG CCGAGCTCGT CGCTCGCATC
GCCTTCTGA
|
|---|
| Protein sequence | MSIAKRGRTY HLRRRVPRRY RRVEPRGTVW ISLHTDSETV ARSKADRAWS QMIEAWEARL
AGNSADAEAR HEAARDLART RGFGYLDAGA VAKLPVEDVV ERVEAIPVPA KQPDPVEAAT
LLGTVPKPRT TVTKALELYW TLAREKTFGK SEDQMRRWEA PRNKAIKNFV SVVGDKEIAN
ITRDDMLDFR QHWLDRIEAG EVTANSANKD LIHLGDVLKT VNTMKRLGLD LPLGELSFKQ
GEARTRPPFS NDWITTRLLT PGALDGLNNE ARGLLLGMVN TGYRPSEGAA LTVDTIRLDC
DVPHISIEPD GRQLKSHHAR RVIPLTGVSL KAFEQFPEGF PRYRNRATLS AVVNKFLRTN
GLLETPRHSF YSLRHSFEDR MLAAGIDDRI RRDLFGHRLD RERYGKGASL EHVAELVARI
AF
|
|---|
| |