| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3421 |
|---|
| Symbol | |
|---|
| ID | 3935895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3469411 |
|---|
| End bp | 3470508 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637905795 |
|---|
| Product | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase |
|---|
| Protein accession | YP_511363 |
|---|
| Protein GI | 89055912 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.823746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATG CGCGCTGGAT GGCCCTGGCG CTGTCCCTGG GCGCGCGCGG CATGGGCCAG
GTCTGGCCGA ACCCGGCGGT GGGCTGCGTT TTGGTGCGCG AGGGACGCGT GGTGGGGCGC
GGCTGGACGG CGCGCGGCGG ACGGCCCCAT GCGGAGGTTG TGGCGCTGGG CCAGGCGGGG
GCGTTGGCGC GCGGGGCGTG TGCCTATGTG TCTTTGGAGC CCTGCAATCA TGTTGGACAG
ACCGGCCCCT GCGCGAGTGC GTTGATCGAC GCGGGCGTGG CGCGGGTCGT GGTGGCCTGC
GAGGACCCGG ATCCGCGTGT GGCGGGCGGC GGCATCGCGC GGCTGCGGGC GGCGGGGGTG
GAGGTTGTCG TGGGCGTTGG CGCGGCAGAG GCTGAGCGCG CCCATACCGG GTTCTTCAGG
CGGGTGCGAG AGGGGCGTCC GATGCTGACG CTCAAAGTCG CGACCTCCCT GGATGGACGG
ATCGCGACGG CCAGCGGAGA AAGCCAGTGG ATCACAGGGC CCGATGCGCG CCGCCGCGTC
CACGGGATGC GCGCGCGCCA CGATGCGGTG CTTGTCGGCG CAGGAACGGC CCGGGCCGAT
GATCCGTCCC TGACAGTGCG TGGATTTGGC GATGTGCCGC AGCCGGTGCG GGTGGTGGTG
TCCCGCCGGT TGGACGTGCC GGTGGACTTG GCTCTGGGTC GCACCGCGCG GGACGTTCCG
GTGTGGCTGG TCCACGGGCC GGATGTGCCC TCGGCAGCGC GCGCGGCGTG GGTGGCGGCG
GGCGCGACAC TGATTGAAAG CGCGCTGGGT GCCGGTGGAC AACTGGACGT CGGGGCCGCT
TTGCAGCGGC TGGGTGAGGC CGGGCTGACG CGGGTGTTCT GCGAAGGCGG AGGGGCGCTT
GCGGCGTCTC TTTTGACCGC GGATCTGGTG GACGAGCTGG CGGTTTTTTC CGGCGGTCTG
GTGATCGGCG CGGAAGGCAC ACCGTCGGTC GGCGCGATGG GTTTGACGGG ATTGGCGGAG
GCGCCTCGGT TCACGCGGGA GCGCGTTGAG GGTGTCGGGC CGGATGCGCT GAGCCTCTGG
ACGCGCACTG TGGAATAG
|
|---|
| Protein sequence | MSDARWMALA LSLGARGMGQ VWPNPAVGCV LVREGRVVGR GWTARGGRPH AEVVALGQAG
ALARGACAYV SLEPCNHVGQ TGPCASALID AGVARVVVAC EDPDPRVAGG GIARLRAAGV
EVVVGVGAAE AERAHTGFFR RVREGRPMLT LKVATSLDGR IATASGESQW ITGPDARRRV
HGMRARHDAV LVGAGTARAD DPSLTVRGFG DVPQPVRVVV SRRLDVPVDL ALGRTARDVP
VWLVHGPDVP SAARAAWVAA GATLIESALG AGGQLDVGAA LQRLGEAGLT RVFCEGGGAL
AASLLTADLV DELAVFSGGL VIGAEGTPSV GAMGLTGLAE APRFTRERVE GVGPDALSLW
TRTVE
|
|---|
| |