| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3419 |
|---|
| Symbol | |
|---|
| ID | 3935893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3466133 |
|---|
| End bp | 3467287 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637905793 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_511361 |
|---|
| Protein GI | 89055910 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0961152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACATCGA GGGTTCCCCG TTTCGCGCGC ATCGCCGCGC TGTGCACCTG TGTGGTTGCC
GTGTCTGCAT GCGATGTGCT GACGCGCGTG CTTCCATCCG CAGGCCCCAC CCGCAACCAG
ATCTTCGCAG GCTCCGTCCA GAACGACGGC GACGCTTTCG TGGTGGAGGT CAACCAACGC
GTCACCGCCG CAACATCCCT GGTGCCGTCA TTGGGCTTCC CGCCGTCCTT ACTGAATGCA
GGGATCTCCA ACACCGACGT GATCCGCCCC GGCGACATGC TGACGCTGAC GATTTTTGAA
AACGTGACCG ATGGCCTTCT GGCCGGGGAA GGCGCGAATG CCGCCCAGTT GACAACGCTT
CAGGTCGACA GCTCCGGTTT CATCTTCATC CCCTATGCGG GCCGGATCCG TGCGGCGGGC
AACACACCCG ATCAGCTGCG CGAGATCATC ACCCGCAACC TCGACGAACA AACGCCCGAT
CCCCAGGTCA TCGTCTCGCG GGAGGCGGGT GACGGCGCGA CCGTTGTTGT TGCAGGCGAC
GTCTCGGGCC AGGGTGTCTT CCCCATCGAA CGTCCCACCC GCACTCTCTC GGGCCTTTTG
GCTGCTGCCG GGGCCACCAC CGTCGATGCC GAAATTACAC GCGTCACGCT TGTGCGGGGC
GGTCAGACCG GCACCGTGTG GTATGAAGAT GTCTTCCGCG ACCCCTCCAT CGATATCGCG
CTGCGGGCCA ATGACCGCGT TCTGGTGGAG GGCGACTCGC GTCGGTTCAC GGCCTTGGGG
GCCACGGGTG CGCAGACGGT CGTGGATTTC GACAGCCAGG TGATTTCTGC CATTGATGCG
ATTGCGTCGG TGGGCGGCCT CAACCCCTCC CTCGCGGACC CGACCGGCGT GTTTGTCCTG
CGCAATGAGC CGGAGGAGCT GGCCAATCTG GTCCTGGCCC GCGACGATCT GATCGGCACC
CAGCGGATGA TCTATGTGCT GGACCTCACC GCCCCCACAG GCATGTTCGA GGCCCGCGAT
TTCGTGATCC GCGACGGCGA TACCGTCTAC GTTACCTCCG CCCCGATCAC CCAGTTCAAC
ACCGCGATCT CTGCGCTGAC CGGCACGTTG ACCGGCGTCA CTGGTATCAC GGACGCGGTC
GACGGCACCA ACTAG
|
|---|
| Protein sequence | MTSRVPRFAR IAALCTCVVA VSACDVLTRV LPSAGPTRNQ IFAGSVQNDG DAFVVEVNQR
VTAATSLVPS LGFPPSLLNA GISNTDVIRP GDMLTLTIFE NVTDGLLAGE GANAAQLTTL
QVDSSGFIFI PYAGRIRAAG NTPDQLREII TRNLDEQTPD PQVIVSREAG DGATVVVAGD
VSGQGVFPIE RPTRTLSGLL AAAGATTVDA EITRVTLVRG GQTGTVWYED VFRDPSIDIA
LRANDRVLVE GDSRRFTALG ATGAQTVVDF DSQVISAIDA IASVGGLNPS LADPTGVFVL
RNEPEELANL VLARDDLIGT QRMIYVLDLT APTGMFEARD FVIRDGDTVY VTSAPITQFN
TAISALTGTL TGVTGITDAV DGTN
|
|---|
| |