Gene Jann_3419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3419 
Symbol 
ID3935893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3466133 
End bp3467287 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content64% 
IMG OID637905793 
Productpolysaccharide export protein 
Protein accessionYP_511361 
Protein GI89055910 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0961152 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACATCGA GGGTTCCCCG TTTCGCGCGC ATCGCCGCGC TGTGCACCTG TGTGGTTGCC 
GTGTCTGCAT GCGATGTGCT GACGCGCGTG CTTCCATCCG CAGGCCCCAC CCGCAACCAG
ATCTTCGCAG GCTCCGTCCA GAACGACGGC GACGCTTTCG TGGTGGAGGT CAACCAACGC
GTCACCGCCG CAACATCCCT GGTGCCGTCA TTGGGCTTCC CGCCGTCCTT ACTGAATGCA
GGGATCTCCA ACACCGACGT GATCCGCCCC GGCGACATGC TGACGCTGAC GATTTTTGAA
AACGTGACCG ATGGCCTTCT GGCCGGGGAA GGCGCGAATG CCGCCCAGTT GACAACGCTT
CAGGTCGACA GCTCCGGTTT CATCTTCATC CCCTATGCGG GCCGGATCCG TGCGGCGGGC
AACACACCCG ATCAGCTGCG CGAGATCATC ACCCGCAACC TCGACGAACA AACGCCCGAT
CCCCAGGTCA TCGTCTCGCG GGAGGCGGGT GACGGCGCGA CCGTTGTTGT TGCAGGCGAC
GTCTCGGGCC AGGGTGTCTT CCCCATCGAA CGTCCCACCC GCACTCTCTC GGGCCTTTTG
GCTGCTGCCG GGGCCACCAC CGTCGATGCC GAAATTACAC GCGTCACGCT TGTGCGGGGC
GGTCAGACCG GCACCGTGTG GTATGAAGAT GTCTTCCGCG ACCCCTCCAT CGATATCGCG
CTGCGGGCCA ATGACCGCGT TCTGGTGGAG GGCGACTCGC GTCGGTTCAC GGCCTTGGGG
GCCACGGGTG CGCAGACGGT CGTGGATTTC GACAGCCAGG TGATTTCTGC CATTGATGCG
ATTGCGTCGG TGGGCGGCCT CAACCCCTCC CTCGCGGACC CGACCGGCGT GTTTGTCCTG
CGCAATGAGC CGGAGGAGCT GGCCAATCTG GTCCTGGCCC GCGACGATCT GATCGGCACC
CAGCGGATGA TCTATGTGCT GGACCTCACC GCCCCCACAG GCATGTTCGA GGCCCGCGAT
TTCGTGATCC GCGACGGCGA TACCGTCTAC GTTACCTCCG CCCCGATCAC CCAGTTCAAC
ACCGCGATCT CTGCGCTGAC CGGCACGTTG ACCGGCGTCA CTGGTATCAC GGACGCGGTC
GACGGCACCA ACTAG
 
Protein sequence
MTSRVPRFAR IAALCTCVVA VSACDVLTRV LPSAGPTRNQ IFAGSVQNDG DAFVVEVNQR 
VTAATSLVPS LGFPPSLLNA GISNTDVIRP GDMLTLTIFE NVTDGLLAGE GANAAQLTTL
QVDSSGFIFI PYAGRIRAAG NTPDQLREII TRNLDEQTPD PQVIVSREAG DGATVVVAGD
VSGQGVFPIE RPTRTLSGLL AAAGATTVDA EITRVTLVRG GQTGTVWYED VFRDPSIDIA
LRANDRVLVE GDSRRFTALG ATGAQTVVDF DSQVISAIDA IASVGGLNPS LADPTGVFVL
RNEPEELANL VLARDDLIGT QRMIYVLDLT APTGMFEARD FVIRDGDTVY VTSAPITQFN
TAISALTGTL TGVTGITDAV DGTN