| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3082 |
|---|
| Symbol | |
|---|
| ID | 3935553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3116249 |
|---|
| End bp | 3117565 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637905453 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_511024 |
|---|
| Protein GI | 89055573 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0814536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.104135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG GAACCATCTC CATCCTGATC GTCGTCGCGA TGATGACGCT TCTGATCCTT
GGCATCCCGG TTGCGTTCGT GTCAGGCGCG ATTGCGGTCG TTTTGACCTT GGTTGCCTTC
GGACCGAACG GGTTGTTCCT GATCGGCGCG CGGACAGCTG AATTTGTAGG GTCGTTTGAA
CTGATCGCTG TGCCGATGTT CGTTCTGATG GCCAGTTTCA TGGAGAAATC CGGCGTCGCG
CGCGATCTGT ATAATGCGTT TCACGTCTGG GCCGGAGCCC TGCGCGGCGG GATTGGCGTG
GTGACGATTT TCGTGGCCGT CGTGTTGGGG GCAACGACGG GCATTATTGG TGGAGAGATT
GTCCTTTTGG GCTTGATCGC ATTGCCGCAG ATGCTGAGGC TTGGCTACGA CAAGAAGATG
GCGATCGGCA TCATCACATC GGGCGGGTCA CTTGGCACCA TGATCCCGCC GTCGATCATC
CTGATCTTCT ACGGCCTCAC GGCGCAAGTC TCGATCTCGC ATCTATTCTT GGCCACGCTG
GTGCCCGGTT TGATGCTGGC CAGCTTCTAC ATTCTCTACG TTCTGGGGCG CTGCTGGATG
AATCCTGCCC TCGGCCCGGC CCTGTCGCCG CAAGAACGCG ACATGCCGCT TGGAGAGAAA
CTGGCCCTGT TCAAAGGCGT CATTCTACCG GTTCTCGTGG CATCGGGCGT GCTTGTGTCC
ATCTACTTCG GCTTCGCTTC GATCACGGAA AGCGCCGCGC TGGGGGCCTT CGGGGCCGCC
GTGACTGCAG CGGTTCGGGG CGTCATGAGC TGGTCCTTGT TACGCGATGT CATGGTGCAG
GCAATGCGCA CCTGCGGCAT GGTGTTCTGG TTGGTGTTCG GCACCAACGC TCTGATCGGC
GTCTACAACC TCATGGGGGG CATTGCCTTC GCGGGGGAGG TCTTGTCGGG CGTGTCCGAC
AACCCTTCGA TCATCCTTGC CGTCATGGTT GGCGTCTTCA TTCTGTTGGG GTTTTTCATC
GACTGGATCG GCATTCTGTT TCTGACGATG CCGATCTTCC TGCCGGTTCT GACCGAGCTT
GGCTATGACC CCATCTGGTT TGGCATTGTC TTCAACCTGT CGATGCAGAT CGCCTATCTG
ACGCCTCCGT TCGGGCCTGC ATGTTTCTAC CTCAAGGGTG CCGCTCCGGA CGGGGTCACC
TTGCAGGACA TCTTCTCGGC GCAATGGCCG TTCATCGGGC TTCAAATCAT GGCGCTTGTG
ATCGTCATTC TTTGGCCTGA TCTGTCGCTG TGGTTGCCAC GGCTGGTCTA CGGGTGA
|
|---|
| Protein sequence | MDIGTISILI VVAMMTLLIL GIPVAFVSGA IAVVLTLVAF GPNGLFLIGA RTAEFVGSFE
LIAVPMFVLM ASFMEKSGVA RDLYNAFHVW AGALRGGIGV VTIFVAVVLG ATTGIIGGEI
VLLGLIALPQ MLRLGYDKKM AIGIITSGGS LGTMIPPSII LIFYGLTAQV SISHLFLATL
VPGLMLASFY ILYVLGRCWM NPALGPALSP QERDMPLGEK LALFKGVILP VLVASGVLVS
IYFGFASITE SAALGAFGAA VTAAVRGVMS WSLLRDVMVQ AMRTCGMVFW LVFGTNALIG
VYNLMGGIAF AGEVLSGVSD NPSIILAVMV GVFILLGFFI DWIGILFLTM PIFLPVLTEL
GYDPIWFGIV FNLSMQIAYL TPPFGPACFY LKGAAPDGVT LQDIFSAQWP FIGLQIMALV
IVILWPDLSL WLPRLVYG
|
|---|
| |