| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2993 |
|---|
| Symbol | |
|---|
| ID | 3935463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3013694 |
|---|
| End bp | 3014371 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637905363 |
|---|
| Product | phage shock protein A, PspA |
|---|
| Protein accession | YP_510935 |
|---|
| Protein GI | 89055484 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.403474 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.419915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGAA CTTTGACGAC CTTGGTAAAC GGTGCCAATG CCCGTGCGGA AGAGCGGGTG
CGGGACCATT ATAGCATTGA ACTTATTGAC CAAAAGATTC GCGAGGCGGA GGCCAGCCTG
AAAGCGGCCA AGTTTTCGCT GGCGTCTTTG ATCCAGCGCG AGCGCTCGGA GTTGCGGCAA
GTGGAGGCTT TGTCGAACCG CATCGTGGAT CTCACGTCAC GCGCAAAGCT GGCGTTGGAT
GATGGGCGCG AGGACATGGC GATGGAGGCG GCGGGCGCGA TTGCGCAGCT GGAGAACGAA
CTGGCGGTCC GGCGCACGAC CGTGGAGCGG TTGGAGACGC GGATCTTGAA GTTGCGCCAG
TCCGTGGAAG GTGCGAACCG ACGAATTACC GATTTGAAAC AAGGGGCTAT CGCGGCACGC
GCGGCGAAGA AAGAGGCGGA TATTCAGGGG CATCTGGGCC GCCACGTCTC CCAAGATACG
GCCTTTGAGG AGGCGGAGGA GTTGATTGCG CGCGTCCTCA ACCGGGATGA TCCGTTCGAG
CAGACGCAAA TTCTGCGCGA AATCGACGAA GGGTTGGACC GGTCTGACAT GACCGAACGC
CTCTCGGATG CGGGCTACGG GGACCCGCTG AAATCCACCG CCGCGGACGT CATGCAACGT
CTGCGCGCCG ACACCTGA
|
|---|
| Protein sequence | MFRTLTTLVN GANARAEERV RDHYSIELID QKIREAEASL KAAKFSLASL IQRERSELRQ
VEALSNRIVD LTSRAKLALD DGREDMAMEA AGAIAQLENE LAVRRTTVER LETRILKLRQ
SVEGANRRIT DLKQGAIAAR AAKKEADIQG HLGRHVSQDT AFEEAEELIA RVLNRDDPFE
QTQILREIDE GLDRSDMTER LSDAGYGDPL KSTAADVMQR LRADT
|
|---|
| |