| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2919 |
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| Symbol | |
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| ID | 3935388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2941696 |
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| End bp | 2943690 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637905289 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_510861 |
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| Protein GI | 89055410 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0110811 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAAAA TTGATCAGAC CCCGCGGATT GATCAATTCG CCGCCGCGCG CAAGCTGCAC
ACGCCAATCT GGCTCTATGA CATCGACGCA TGTCGGATTC TGCACGCCAA TCGTGCCGCC
TGTGCGCTGT GGCACGCGCG CTCGGAAGAG GAGTTGCAAA ACCGCGATCT GGCACAGGAT
ATGTCTGCGA CGGTTGCCAA ACGTCTGGCG CAGTACAAAG CCGATTTCAT TGCGCGCGAC
GCCACTTTCA ACGAGATGTG GACCCTGTTC CCCGACGGCG TCCCAACCAG TGTCATGGTG
CTGTTCAGCG GGTTCCGTCT GCTTGACGGA CGCATGGCGA TGCAATGCGA GGTTCTGGGC
GCACCCGATC CGCTACCAGA CAACCTCCGC AGCGCCGAGG CGCTGTTACA CACCGACGTC
ATGATCACGC TGTTCCGGGA AGACGGTGTT CCGCTCTACA TGAACCCCGC CGCGCGCAAC
ATGGTCGGAG AGGCCAGCGC CCCGTTGCGG GACCTGTTGG TTACGCGAAC CGACTATGAC
ACTATGGTCA GTGGCCTCGC CAAAGGGGGC GAACACCGCC AGGTCGCGGA AATTCAAACG
AAAACTGGCA CACGCTGGTT CGACATCTCT GCCAAGCGAT GTCGGGACGC CGCCACAGGT
GATCCGGCTG TCCTTGTGAC AGCCATTGAC GTGAGCGAAT TAAAGCGCGC CCGCGATCAG
GCCCGCTATC TCGCCCGCCG CGATCAACTG ACAGGGTGCT ACAATCGCTC GCACCTGACA
CGGTTTGTCG CGGAGCTGGC TGATGCGCAG GCCACGCAGG TCACCCTACT CTACTTCGAT
ATCGACCGGT TCAAGCAGAT CAACGACACC TACGGGCATG TCATCGGCGA CCGTGTTCTG
ATGGCGATGG CAGATCGCGC CATCCAGCTG ACGCAGGACA CCGATGCGGT CGTGCGCCTG
GGCGGCGATG AGTTCGTGGT TGTCCTGGGC GCGACGGATG CAGCGTCGCG GTTGGAACGG
GTCGAGCGGT TTTTCAAAGC CTTGTCCGCC CCAACGGACT TCGCCTCGAT CACGGTGAAC
AGCCGGGTCA GTCTGGGAGT TTCCGTCTTC GATCCGACCC AGACCGATGT CGACGTGGCC
CTGCGCCATG CCGACATCGC GCTTTATCTG GCCAAGAATA CCGGGCGCAA TCGGTACGTC
GTCTACGATG ACCAAATGGG CGAAGAGGCG GACAAGCGCA GCCGCACCGA GGCTGAGATC
GAGAGCGCGC TTAACGCGCA GCAATTTGAG CTTTACTACC AGCCAAGGGT CGATCTGGCG
AGCGGACGCA TCGTGGCCGT GGAGGGCCTG GCGCGGTGGC GGCATCCTGA TCGTGGGTTT
GTGCCACCTG ACGAGTTTAT CCCGATCTGC GAGGAAACCG GCCTGATCCA CCTGTTGGGG
CGGCGCGTGT TGGAGATGGG TTTCGCCCAG GCCATTGCTT GGAGCGAGGC GGGGCTGGAC
GTGCAGTTAT CGCTCAATAT TTCCCCGCGC CAGTTCTCGG ACCCGCAATT GTTGGACAAT
TTGAAGGCCT ATGCCGACCG TCCGGATTTC CCGACCCACA AGATCGAGCT GGAGATCACC
GAAAGCGTCT TGATCGGGGA CCAGGACGGG ATCGCAGCCA AGCTGCACGC GATCACGGCG
ATGGGCTACC AGATCTCGAT TGACGACTTC GGCACAGGCT ATTCGAACCT GTCCTATATC
TCGCGGTTTC CCTTGCATTG CCTCAAGATC GACCGCTCAT TCATTGAGCA ATTGCCTGCC
TCGGGCCCTA TTGTGCGGCT GATCCTTGCG CTGGCTCAGG AATTGGGTGT GACTTCCGTG
GCCGAAGGGG TGGAGACGCA AGCGCAATTC GACTGGCTGA CCTCCCATGG CTGCACGCAG
ATCCAAGGCT ATTTCGTGGC CCACCCAGCA CCAGCCGACG ATGTTGCTCT GCTTCTGCGG
CCCGTTCCCA CCTAG
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| Protein sequence | MDKIDQTPRI DQFAAARKLH TPIWLYDIDA CRILHANRAA CALWHARSEE ELQNRDLAQD
MSATVAKRLA QYKADFIARD ATFNEMWTLF PDGVPTSVMV LFSGFRLLDG RMAMQCEVLG
APDPLPDNLR SAEALLHTDV MITLFREDGV PLYMNPAARN MVGEASAPLR DLLVTRTDYD
TMVSGLAKGG EHRQVAEIQT KTGTRWFDIS AKRCRDAATG DPAVLVTAID VSELKRARDQ
ARYLARRDQL TGCYNRSHLT RFVAELADAQ ATQVTLLYFD IDRFKQINDT YGHVIGDRVL
MAMADRAIQL TQDTDAVVRL GGDEFVVVLG ATDAASRLER VERFFKALSA PTDFASITVN
SRVSLGVSVF DPTQTDVDVA LRHADIALYL AKNTGRNRYV VYDDQMGEEA DKRSRTEAEI
ESALNAQQFE LYYQPRVDLA SGRIVAVEGL ARWRHPDRGF VPPDEFIPIC EETGLIHLLG
RRVLEMGFAQ AIAWSEAGLD VQLSLNISPR QFSDPQLLDN LKAYADRPDF PTHKIELEIT
ESVLIGDQDG IAAKLHAITA MGYQISIDDF GTGYSNLSYI SRFPLHCLKI DRSFIEQLPA
SGPIVRLILA LAQELGVTSV AEGVETQAQF DWLTSHGCTQ IQGYFVAHPA PADDVALLLR
PVPT
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