| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2197 |
|---|
| Symbol | |
|---|
| ID | 3934651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2206290 |
|---|
| End bp | 2207630 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637904554 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_510139 |
|---|
| Protein GI | 89054688 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.378347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGGGT TTGGGATGAA ACTGTTTCCT TTGCTGACGG CAGCCTTGGT TTGCGTCGTG
CTCTACTTCG CGATTCTCGA CCGCGAGACG CTGGTCAGCT TCGCCGAGCG CTATGTCCCG
CAGCCCAACA ATGTCTCCAC AGAATTGGCG GAGGTCGATG ACGGTGTCGC ACCCGCTGCC
GATGATGGCC TGATCAGCGT GGTTGTGCGC CGGTCCGAGG CACAAGTGAC GGAAAACGCC
GTGCAATTGC GGGGCCGGAC AGAGGCCCTG CGCCTTGTTG ATGTGGCGTC TGAGACCTCT
GGTCGCATTA TTTCCACCCC GATCCGCGCA GGCGCCTTCG TGAATGCGGG CCAGGTGATG
TGTGAAATTG ACCCCGGCAC GTCCCAGACG GCTCTGGAAG AAGCGATGGC CCGTTTGGGA
GAGGCCGAGG CCCGTGTACC GGAAGCCGAA GCCCGTGTTC CCGAGGCCCA GGCCCGCCTT
CCCGAGGCGC GCGCACTGCT GGCCCAGGCC GAAGCACAAC TGACGTCTGC GGAAATTGAC
GGCAACGCCG CCACACGGTT GGCCGAATCC GGGTTCGGGT CTGACACCCG CGCCGCGTCC
GCCACAGCGG GCGTTGCAGC CGCAGAGGCG GGCGTCGAAA GCGCCATGGC CGCCGTTCAG
GGGGCCCAGG CGGGCGTGCA GGGTGCTGAA GCGGGCGTGC AATCAGCCCT GGCGGGGGTG
CGCGCGGCAG AAGCGGCGGT GACCCGCGCG GAAGAAGCGA TTGAGCAACT GACGATACGC
GCGCCCTTCT CGGGCCTGTT GGAGACTGAC ACGGCAGAAT TGGGCGCGCT GATGCAGCCC
GGCACAATCT GCGCCACGAT CATCCAACTT GATCCGATCA AACTGGTGGG CTTCGTGCCC
GAGGCGCAGG TCGACCGGAT CAGGGTCGGG GCCACGGCGG GGGCGCAACT GGCCTCCGGT
CAACAGGTCC AGGGGGAGGT CACGTTCCTG TCGCGCTCTG CCGATGAGCG CACGCGGACC
TTCCGGGTCG AGATCACGGT GCCCAACAGC AATCTGGAAA TCCGCGACGG TCAGACGGCA
GATATTCTGG TTCGCACCGA TGGCACGCCC GCCCATCTTC TGCCTGCCTC CGCCCTGACG
CTCAATGACG AAGGGCTTCT GGGTGTCCGT ATCGTGGACG GTGGCGTGGT CCAGTTCGTT
GAAGTTCAGA TGATCCGCGA CACCGCGCGC GGGGTTCTGT TGGCGGGCTT GCCGGATCAG
GCGGATGTCA TCGTCGTCGG TCAGGATTTT GTGACGGCGG GCGTCGAAGT CGCGACGACG
TTTGAGGAGT TGACCCAATG A
|
|---|
| Protein sequence | MRGFGMKLFP LLTAALVCVV LYFAILDRET LVSFAERYVP QPNNVSTELA EVDDGVAPAA
DDGLISVVVR RSEAQVTENA VQLRGRTEAL RLVDVASETS GRIISTPIRA GAFVNAGQVM
CEIDPGTSQT ALEEAMARLG EAEARVPEAE ARVPEAQARL PEARALLAQA EAQLTSAEID
GNAATRLAES GFGSDTRAAS ATAGVAAAEA GVESAMAAVQ GAQAGVQGAE AGVQSALAGV
RAAEAAVTRA EEAIEQLTIR APFSGLLETD TAELGALMQP GTICATIIQL DPIKLVGFVP
EAQVDRIRVG ATAGAQLASG QQVQGEVTFL SRSADERTRT FRVEITVPNS NLEIRDGQTA
DILVRTDGTP AHLLPASALT LNDEGLLGVR IVDGGVVQFV EVQMIRDTAR GVLLAGLPDQ
ADVIVVGQDF VTAGVEVATT FEELTQ
|
|---|
| |