| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2105 |
|---|
| Symbol | |
|---|
| ID | 3934558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2114134 |
|---|
| End bp | 2114982 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637904461 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
|---|
| Protein accession | YP_510047 |
|---|
| Protein GI | 89054596 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.642671 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.450166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTT TGCGCTATGG CCCTGTCGGG TCCGAGAAAC CCGGAATGCT GGACGCAGAT
GGCGACCTGC GGGATCTGTC TGGCGAGGTT GCGGACATTG CGGGCGATAT CCTGACACCG
GAGGGGTTGG CGCGGCTGGC AGCGTTGGAC CCGACATCCC TTCCGCGTAT CGAAGGATCG
CCCCGTCTCG GCGCATGTGT GGGCGATGTG GGCAAGATGA TCTGCGTCGG CCTGAACTAC
GCCGATCACG CCGCGGAATC GGGCATGGAC GTGCCACCCG AGCCGGTGCT GTTTTTCAAG
GCCACATCGG CCATTTGCGG CCCCAACGAT GATGTTCGCA TCCCGCGAGG GTCCGCAAAA
ACCGATTGGG AGGTGGAGCT TGGCGTCGTG ATCGGCCGTG AAGCGCGATA CGTCGATGAA
GCCCACGCCA TGGACCATGT GGCGGGCTAT TGCATCATCA ACGACTTGTC CGAGCGCGCG
TTTCAGATTG AACGCTCCGG TCAATGGGTC AAAGGAAAAT CCGCCGATAC GTTCGGCCCG
ACGGGCCCCT GGCTGGTCAC GAAAGACGAG GTGGAAGATC CCCAGGATCT GGCCATGTGG
CTAGAGGTGG ACGGGCACCG CTATCAGGAC GGCTCCACCC AGACGATGGT CTACGGCGTG
CAGCATCTGG TGCATTACAT CAGCCAGTTC ATGAGCCTTC AGCCCGGCGA CATCATCTCC
ACCGGGACCC CGCCGGGCGT GGGTATGGGT CAGAAGCCGC AGGTCTATCT GCGCGAAGGC
CAGGTGATGG AACTGGGCAT CGCGGGCCTC GGGACGCAGC GGCAACAAAC TATCGCCTGG
GACGCCTAG
|
|---|
| Protein sequence | MKLLRYGPVG SEKPGMLDAD GDLRDLSGEV ADIAGDILTP EGLARLAALD PTSLPRIEGS
PRLGACVGDV GKMICVGLNY ADHAAESGMD VPPEPVLFFK ATSAICGPND DVRIPRGSAK
TDWEVELGVV IGREARYVDE AHAMDHVAGY CIINDLSERA FQIERSGQWV KGKSADTFGP
TGPWLVTKDE VEDPQDLAMW LEVDGHRYQD GSTQTMVYGV QHLVHYISQF MSLQPGDIIS
TGTPPGVGMG QKPQVYLREG QVMELGIAGL GTQRQQTIAW DA
|
|---|
| |