| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1947 |
|---|
| Symbol | |
|---|
| ID | 3934398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1938785 |
|---|
| End bp | 1939762 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637904301 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_509889 |
|---|
| Protein GI | 89054438 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.984077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCAA TTCTACAAGG CATCATCACC ATTATCGTCG GTGTCGGCGG GTGTGTCGGC
TACTTCTACT TCGCCAACCT CTTCCTGGAT AAGGTTCTGT TCCCGGCCAA GGGGCCGAAT
GCAGGGCGCA ACATCAATCG CGCCAACCAG ATTCGCCCCT GGGTGTTTCT GTTTCCGGCG
ATCTTCGCGC TTGGCCTCTA CCTGATGTAT CCGGTCGTGG GCTCGTTCAT CCGGTCCCTC
TATGACCGGT CGGGCGACGA GTTTGTGGGG GCGGGCAATT ATATACGCCT GTTCAACAAC
CCCGATTTCC GCACCGCGTT TCTGAACAAC ATTCTCTGGG CGCTTGTGGT GCCCGCCTTG
TCCACCTTCA TGGGCCTTCT GATCGCGCAG CTCACGGACC GCCTGAAATG GGGCAACATC
GCCAAGTCGA TCATCTTCAT GCCGATGGCG ATCTCCTTCG TGGGTGCCTC GCTGATCTGG
AAGTTCGTCT ACGCGCAGGA CCCCGATCTG GGGATCATCA ACGCGATCCG AACCTCCTTT
GGCGGCGATC CGGTGGACCC GCTTCAGATC CCGTTCTGGA ACAACTTCCT GCTGATGTTC
ATTCTGGTGT GGATCCAGAC GGGCTTTGCC ATGGTGATCC TGTCCGCCGC CCTGCGCGGT
GTGCCCGAAG AAACCATCGA GGCCGCGATC ATCGACGGGG CCAACCCGTT TCAGGTGTTC
TTCAAGATCA AGGTGCCGCA GATCATCGGC ACCATCGTCG TGGTCTGGAC CACGATTACC
ATCCTTGTCC TGAAGGTCTT CGACATCGTC TACACGATGA CCGGCGGCAA TTACGGGACC
GAGATTCTGC CGTCCTTCAT GATGGATTTC ATGTTCCGCG ACGATGGGCA GGCAACGGCT
GTGGCCTTCG TGATCATGCT GGTGGTTCTG CCGGTGATGA TCTGGAACAT TTTGCAAGCC
CGTAAGGAGA TGCGTTAA
|
|---|
| Protein sequence | MSPILQGIIT IIVGVGGCVG YFYFANLFLD KVLFPAKGPN AGRNINRANQ IRPWVFLFPA
IFALGLYLMY PVVGSFIRSL YDRSGDEFVG AGNYIRLFNN PDFRTAFLNN ILWALVVPAL
STFMGLLIAQ LTDRLKWGNI AKSIIFMPMA ISFVGASLIW KFVYAQDPDL GIINAIRTSF
GGDPVDPLQI PFWNNFLLMF ILVWIQTGFA MVILSAALRG VPEETIEAAI IDGANPFQVF
FKIKVPQIIG TIVVVWTTIT ILVLKVFDIV YTMTGGNYGT EILPSFMMDF MFRDDGQATA
VAFVIMLVVL PVMIWNILQA RKEMR
|
|---|
| |