| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1918 |
|---|
| Symbol | |
|---|
| ID | 3934369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1906195 |
|---|
| End bp | 1906821 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904272 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
|---|
| Protein accession | YP_509860 |
|---|
| Protein GI | 89054409 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.498444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGG CGACAGCCCC TTGGGCGGCC TTCGGGCCGC TCCTCGCTGC GCTCCTCGCC
GCCGCTCCGA TTGGGGCGAC GGGGATCGAG ATCGACGTTG CCGGAGAGGC CGAGGGTACG
ATTGTCATCG ACCTGTTCGA GGATGTCGCT CCGCTGCACG TGGAGCGGAT CACAACGCTG
GCCACGGAAG GCGCGTATGA CGACATTGTC TTCCACCGGG TGATTGACGG CTTCATGGCA
CAGACCGGCG ACGTTGAGTT TGGCGGTTTG GGTCAGGACA TGCGCTATGC GGGGCGGGGC
GGGTCGACCT ATGACGATCT GCCAGCTGAA TTCTCGGACC TCTCGTTCGA GCGCGGAACA
TTGGGCATGG CACGGTCCCA GCGACCGGAT TCGGCCAACA GCCAGTTTTT CATCGTGTTC
GAGGCGGCCT CGCACCTGAA TGGCCAATAT ACCGTGTTCG GACAGGTGGT GGACGGCATG
GATGTGGTCG ACATGATCCG CCGGGGCCGG GGCCGCAATG GGGCCGTGAC CGGAGAGCCG
GACCGCATGA CCGCCGTGCG GGTGCTGGAT TTTGACCCGG AGCCTCCTGA ACCTGAAGAA
GAAGACGCAG AGGAGGCGTC TGAATAG
|
|---|
| Protein sequence | MRKATAPWAA FGPLLAALLA AAPIGATGIE IDVAGEAEGT IVIDLFEDVA PLHVERITTL
ATEGAYDDIV FHRVIDGFMA QTGDVEFGGL GQDMRYAGRG GSTYDDLPAE FSDLSFERGT
LGMARSQRPD SANSQFFIVF EAASHLNGQY TVFGQVVDGM DVVDMIRRGR GRNGAVTGEP
DRMTAVRVLD FDPEPPEPEE EDAEEASE
|
|---|
| |