| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1881 |
|---|
| Symbol | |
|---|
| ID | 3934332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1869276 |
|---|
| End bp | 1871003 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637904235 |
|---|
| Product | protein of unknown function DUF610, YibQ |
|---|
| Protein accession | YP_509823 |
|---|
| Protein GI | 89054372 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2861] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.176772 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGTC TGAGTATTGG GATATTCTGG GGGGCACTGG TGTCCGCCGT GGGGCTTGTG
GCGGTGTCGT TGAGCAATCC GCTGCCACCG CGCGGAGAGA TTGACGGGGC AGAGGTCTCG
GTTGCCGGGG AGGCTGGCGA CGCGGCGACA CCGGCGGAGG CCCCTGAACA GGACGTGCCA
GAGACGGCGG ATGTTGAGGT GCCTGAACCA TCGCTTGACG TGGCCGCCGA GGTCACCGCA
GAAGCCGCCG AAGGCGGTGT GGAGGAGGAA GCACCGCCCC CCCCGCTTGC GGAAACGTCC
GAAGAACCAT CCCCGGGAAC GGCAACGCCT GCCACGGAAG TTCCCTTGCC CTCTGGTTCG
GAATTCAACC GTCCGCCGCC CGAGCCGGAG GCGGCATTGC CCGCCCCCGA TGCGGCCCCT
GCGGCCATCG CGCCGCAAGC GCCGGCCTTA TCGGGAAATG AAATTGCGCC GCGGTTTGAC
ACATCGCCCG CAGCACAGCC CTCGGTCGTG GCGGATGCGC CGACGCAGAT CGCCGCCGCC
TCGGGCGATG CGACCGCCCC CGCAAGCCCC GCGCTGGCCC CGGCCCCCGT GATCGCGGGC
GGACCCACGG CGCTGACCCA GCCCGAGACC AGCGATGCGC CCCGGGTGCG CACGTCCTTG
TTGCCGCAAA TCGCCGCAGA GCCGGACGTC CCGGAGGAAG AGGCGGCTGC AAACGAGGGT
GTGGAGGACG TGACCGGGGA GGAAGAGACC CTTGCCATCG TGGACCCTGA GCCGGAGATC
GTGCCCCTGC CCACGCCAGT CTTTCCGTCC ATCGGGGATC AGGCGCTGTC GGAGGAAGAG
ACCGCGACAG GCGCCCCCGA CCTGCCTGCT GACATCGGTG ATGCGCCCTC CCTGTCGCGC
CCGGCAGAGG ACGTGGCCGC GCTGCCGACA CCAGCCTTTC CGCAAACGAG CGGTTTGCCC
CAGGTCGCGA TCCCGATGGA GCGGGAGGCG GAGGTTGAAG AACCGCTGCC CGAAGAAGAT
CCTGCGCCGG TGGATCTTGG CGATCTTCCA GCGATCCAGG CCTTTGCCGC GCCCTTTGAC
GGTGCCGGGG ACCGGCCGTT GATGGCTGTG GTCCTGATTG ATGAGCCGGA GAGCCAGATC
GACATCGAGA CACTGACGCG GTTTACCTTT CCGGTGGCCT TTGCGGTTGA CCCGCTGCAC
CCCGACGGTG CTGCGCGCGC CGCGGCCTAC CGGGAGGCCG GGTTTGAGGT GGTGATCCTG
GGCGCGATGG TGCCGGACGG GGCGACGGCG GTGGATACGG AAGTCGCGCT GATGGCAGCA
CTGGCAGACC TGCCCGAGGC GGTCGCGGTG ATCGACACGC CGGAAGGGCG GATCCAGGGA
GACCGCCCGG TTCTGGACGC CATGGTTGGC GCGCTGGCGG ACAGTGGCCA TGGGTTGGTG
GCCTTTCCCC GGGGGCTGAA TGCAGCGGAG CAATCGGCAT CGCGTGCGGG TGTGCCGGGG
GCGACGGTGT TCCGCTACCT GGATGGCGAG GACGAGCGCG CGACGGTGAT CACACGCTTC
CTGTCGCGCG CGGCCTTCGC GGCGGCGCAG GAGGGCACAG TGGTCGTGGT GGGTCGCACC
CGGCCCGATA CGGTGACCGC GCTGTTTTCC TGGGCGCTTG GGGGCCGGTC TGAGGCCGTG
GCCCTGGCGC CGTTATCGGC AACGCTGCTG CGGGCGGCAT CCGAGTAG
|
|---|
| Protein sequence | MGGLSIGIFW GALVSAVGLV AVSLSNPLPP RGEIDGAEVS VAGEAGDAAT PAEAPEQDVP
ETADVEVPEP SLDVAAEVTA EAAEGGVEEE APPPPLAETS EEPSPGTATP ATEVPLPSGS
EFNRPPPEPE AALPAPDAAP AAIAPQAPAL SGNEIAPRFD TSPAAQPSVV ADAPTQIAAA
SGDATAPASP ALAPAPVIAG GPTALTQPET SDAPRVRTSL LPQIAAEPDV PEEEAAANEG
VEDVTGEEET LAIVDPEPEI VPLPTPVFPS IGDQALSEEE TATGAPDLPA DIGDAPSLSR
PAEDVAALPT PAFPQTSGLP QVAIPMEREA EVEEPLPEED PAPVDLGDLP AIQAFAAPFD
GAGDRPLMAV VLIDEPESQI DIETLTRFTF PVAFAVDPLH PDGAARAAAY REAGFEVVIL
GAMVPDGATA VDTEVALMAA LADLPEAVAV IDTPEGRIQG DRPVLDAMVG ALADSGHGLV
AFPRGLNAAE QSASRAGVPG ATVFRYLDGE DERATVITRF LSRAAFAAAQ EGTVVVVGRT
RPDTVTALFS WALGGRSEAV ALAPLSATLL RAASE
|
|---|
| |